Can Anyone Suggest Me A Program For Converting Dot-Bracket Notation Format To Standard Hybridization Format.
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Entering edit mode
10.6 years ago

Hello,

I am interested in converting: Dot-Bracket notation format to Standard hybridization format.

Example :

Dot-Bracket notation -

UGACGAUCAAAGGUGGGCCACU&GUGGCCAACUUCUAGUCAU    
((((......((((.((((((.&)))))).))))...)))).

to Standard hybridization format -

     GAUCAA        
 UGAC      AGGUGGGCCACU    
 ||||       |:||.||||||.    
UACUG      UUCAACCGGUG    
      AUC

or possibly like this :

 UGACGAUCAAAGGUGGGCCACU
 ||||  | | ||||.||||||.
UACUG--A-UCUUCAACCGGUG
rna sequence format conversion • 3.7k views
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