Is there an online resource with freely available transcriptomes data from?

Question

[lahat.albert]

I am looking if there is a resource that collects transcriptome data that I could use for meta-analysis.

[Chirag Nepal]

There is a suite of high-throughput data (CAGE-seq, RNA-seq and Chip-seq) from various developmental stages of zebrafish and tetraodon, available at UCSC custom tracks.

http://genome.ucsc.edu/goldenPath/customTracks/custTracks.html#Zebrafish

OF course you will have similar data for human and mouse from encode.

Answer 1

[pcantalupo]

Hello,

Here are two resources to start with:

• EBI Array Express
• NCBI GEO datasets

[lahat.albert]

Thank you, I will look at them.

Answer 2

[mark.ziemann]

Just today, we publicly announced Digital Expression Explorer - our effort to increase the re-use rate of public RNA-seq data. See my recent post. It should help you get your count matrices quickly without downloading seq data from SRA.

* EDIT the current URL for DEE2 is http://dee2.io/ *