Prediction of Proteome disorder

Question

[eka0700]

Hello everyone,

I'm going with plant proteome & trying to predict disorder of those proteins. But I didn't find any server which can predict the disorder for whole proteome at a time. I've experienced RONN, PODDLE, MFDP2. Is it feasible for whole proteome? any other tool? If not then please give your valuable suggestion about the work.

Thanks in advance.

[5heikki]

Please explain your research question more clearly.

Answer 1

[shelly.deforte]

I know this is an old question, but I have recently had great luck with RAPID for whole proteome disorder prediction. http://biomine-ws.ece.ualberta.ca/RAPID/index.php

Answer 2

[eka0700]

Thanks. I want to calculate the degree of intrinsic disorder in the complete proteome of 2 plants. but the server predict protein disorder for a single sequence or for a limited number of sequences. How can I calculate it for the whole proteome?