Creating this post to start a Lancet tag for the Lancet tool being developed at the New York Genome Center
updated 2.1 years ago • bzhu
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I am trying to automate routine pubmed searches for daily use. My goal is for the program to output the publications present on pubmed for that day e.g. to get all publications from Nature on 8 Mar 2020.
So far I have the following:
cd /Users/nattzy/Documents/journal_articles
mkdir "$(date +"%Y-%m-%d")"
journals=('nature' 'nature communications' 'lancet')
for i in "${…
MEM, Bowtie2)
> 2. BAM calibration
> 3. Variant calling: Using 3 software (Mutect2, Strelka2, Lancet)
> 4. Variant filtering: I keep just the variants marked as 'PASS'
**Questions**
As you can see there are at least 6 VCFs per...me two independent files with SNVs and Indels, so I had to use the concat tool from BCFTOOLS. Also, Lancet gave me SNVs and Indels in a single VCF …
retooling a pipeline to do consensus calling between 3 variant callers, Mutect2, strelka, and lancets. We would like some thoughts on the best way to do consensus calling on the VCF outputs. We have some older custom scripts
The **Biostar Herald** publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit [links here](/herald/).
This edition of the Herald was brought to you by contribution from [Istvan Albert](https://www.biostars.org/u/2/),
and was edited by [Istvan Albert](https://www.biostars.org/u/2/)…
updated 2.1 years ago • Biostar
We are working on prediction and prevention of disease progression in patients (e.g. Liu et al., Lancet Neurology, 2017) and on repurposing of drugs for Parkinson's patients (e.g. Mittal et al., Science, 2018) using genome sequencing
updated 16 months ago • msullivan70
from the Neurogenomics Lab for background, particularly Liu et al., Nature Genetics, 2021; Liu et al., Lancet Neurology, 2017; Dong et al., Nature Neuroscience, 2018. Learn more about our research at www.scherzerlaboratory.org
updated 2.7 years ago • sschwaninger
Based Cohorts. Pastore A, Jurinovic V, Kridel R, Hoster E, ... Gascoyne RD, Weinstock DM, Weigert O. Lancet Oncol. 2015 Sep;16(9):1111-22. PMID: 26256760.
3. Whole transcriptome sequencing reveals recurrent *NOTCH1* mutations in
updated 16 months ago • robert.kridel
Based Cohorts. Pastore A, Jurinovic V, Kridel R, Hoster E, ... Gascoyne RD, Weinstock DM, Weigert O. Lancet Oncol. 2015 Sep;16(9):1111-22. PMID: 26256760.
3. Whole transcriptome sequencing reveals recurrent *NOTCH1* mutations in
variation in alcohol-related hepatocellular carcinoma: a case-control genome-wide association study. Lancet Oncol. 2022;23:161-171
[2] Trépo E, et al. Combination of gene expression signature and model for end-stage liver disease
updated 21 months ago • Nicolas Rosewick
disorders in the UK: a retrospective diagnostic accuracy and prospective clinical validation study. Lancet Neurol. 2022;21;234-45.
2. Han X et al. Neuronal NR4A1 deficiency drives complement-coordinated synaptic stripping by
Novogene has been at the forefront of using cutting-edge molecular biology technology and high-performance computing in the domains of life science research and health care since its start. The nature Index Special Report of "Top 5 countries", published on 10th March, presented Novogene's advancing genomics and bioinformatics and demonstrated its world-leading research service quality and achieve…
updated 21 months ago • Novogene
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