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1,000 results • Page
1 of 20
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Views
Votes
Replies
5
votes
3
replies
224
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 2 days ago by
GenoMax
141k • written 3 days ago by
Estevão
• 0
0
votes
0
replies
161
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
3 days ago by
yxwucq
• 0
4
votes
2
replies
281
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 10 days ago by
Ram
43k • written 10 days ago by
Adi
▴ 10
7
votes
7
replies
1.2k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 11 days ago by
Dunois
★ 2.5k • written 11 days ago by
AdviceSeeker
• 0
1
vote
2
replies
338
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
9 days ago by
Javier
• 0
16
votes
10
replies
1.0k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 28 days ago by
Madelaine Gogol
5.3k • written 29 days ago by
Ann
★ 2.4k
1
vote
1
reply
218
views
Forum:
Can I use this community for software development?
software-development
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
avpuzanov
• 0
5
votes
2
replies
384
views
Forum:
Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 4 weeks ago by
Michael
54k • written 4 weeks ago by
avpuzanov
• 0
0
votes
0
replies
171
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
Mohammed
• 0
1
vote
3
replies
473
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
6 weeks ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
668
views
Forum:
Bioinformatics career transition
career
forum
updated 6 weeks ago by
jared.andrews07
★ 16k • written 6 weeks ago by
jevill17
▴ 20
4
votes
2
replies
473
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
6 weeks ago by
Anatoly A.
▴ 10
6
votes
6
replies
759
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
7 weeks ago by
jared.andrews07
★ 16k
0
votes
0
replies
160
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
367
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
7 weeks ago by
Dave Carlson
★ 1.7k
31
votes
12
replies
947
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
8 weeks ago by
karlaarz
▴ 90
5
votes
4
replies
551
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 9 weeks ago by
GenoMax
141k • written 9 weeks ago by
Mango
▴ 10
1
vote
2
replies
366
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 9 weeks ago by
ATpoint
82k • written 9 weeks ago by
ashaneev07
▴ 20
8
votes
7
replies
788
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 9 weeks ago by
emmanouil.a
▴ 120 • written 12 weeks ago by
harasharan
• 0
1
vote
0
replies
276
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 9 weeks ago by
Pierre Lindenbaum
161k • written 9 weeks ago by
Bogdan
★ 1.4k
4
votes
2
replies
371
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 11 weeks ago by
dsull
★ 5.8k • written 11 weeks ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.8k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
0
votes
0
replies
199
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
Akos
▴ 20
2
votes
3
replies
433
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
12 weeks ago by
Ajay A Shettigar
• 0
17
votes
11
replies
981
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.2k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 23 months ago by
sakichwan
▴ 20
26
votes
27
replies
2.0k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 3 months ago by
dsull
★ 5.8k • written 3 months ago by
Rozita
▴ 40
7
votes
6
replies
729
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 3 months ago by
Ram
43k • written 3 months ago by
Petur
▴ 20
21
votes
12
replies
3.5k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
2
votes
1
reply
416
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
3 months ago by
LauferVA
4.2k
49
votes
20
replies
2.0k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 3 months ago by
Mensur Dlakic
★ 27k
4
votes
3
replies
757
views
Forum:
How to get started in bioinformatics
students
updated 3 months ago by
Ram
43k • written 3 months ago by
Soidihane
▴ 10
2
votes
2
replies
578
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 3 months ago by
Ram
43k • written 3 months ago by
cwwong13
▴ 40
0
votes
2
replies
3.2k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 3 months ago by
GenoMax
141k • written 3 months ago by
Mango
▴ 10
5
votes
3
replies
602
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
Konstantin
▴ 20
6
votes
2
replies
658
views
Forum:
how to start Bioinformatics?
basics
updated 4 months ago by
Mensur Dlakic
★ 27k • written 4 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.1k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
4 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
923
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 4 months ago by
Ram
43k • written 4 months ago by
Daniel
• 0
1
vote
1
reply
486
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 4 months ago by
Ram
43k • written 5 months ago by
Afeef
• 0
3
votes
5
replies
1.0k
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 4 months ago by
Ram
43k • written 5 months ago by
Paulo
• 0
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 13 months ago by
bompipi95
▴ 150
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by
Istvan Albert
100k
3
votes
2
replies
620
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 5 months ago by
fturner
▴ 10 • written 5 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
367
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 5 months ago by
Ram
43k • written 5 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
0
votes
0
replies
446
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
6 months ago by
ishwarvh
• 0
0
votes
0
replies
352
views
Forum:
Automated Checks And QA
retrospective
6 months ago by
Sasha
▴ 840
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 6 months ago by
kieran
▴ 10
21
votes
7
replies
11k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 6 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
1,000 results • Page
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Recent Votes
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
Comment: Convert SAM to BAM
Comment: Should I use unpaired reads from trimmomatic
Answer: Should I use unpaired reads from trimmomatic
A: Mean Variance Relationship single cell RNA-Seq Data
Answer: Blasting two protein sequences vs two nucleotide sequences
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Recent Awards •
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Popular Question
to
chaco001
▴ 40
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GenoMax
141k
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▴ 140
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Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
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