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378 results • Page
1 of 8
Sort: Rank
Rank
Views
Votes
Replies
6
votes
4
replies
439
views
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
15 days ago by
Estevão
▴ 10
0
votes
0
replies
194
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation
scRNA
llm
25 days ago by
yxwucq
• 0
5
votes
2
replies
368
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
Adi
▴ 20
7
votes
7
replies
1.9k
views
Forum:
Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career
advice
updated 4 weeks ago by
Dunois
★ 2.5k • written 4 weeks ago by
AdviceSeeker
• 0
1
vote
2
replies
405
views
Forum:
VCF bulk handling
bcftools
SnpEff
WGS
VEP
VCF
4 weeks ago by
Javier
• 0
16
votes
10
replies
1.2k
views
6 follow
Forum:
F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 7 weeks ago by
Madelaine Gogol
5.3k • written 7 weeks ago by
Ann
★ 2.4k
1
vote
1
reply
246
views
Forum:
Can I use this community for software development?
software-development
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
avpuzanov
• 0
5
votes
2
replies
407
views
Forum:
Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 7 weeks ago by
Michael
54k • written 7 weeks ago by
avpuzanov
• 0
0
votes
0
replies
195
views
Forum:
Field of Study in Computational Biology
Genomics
Computational-Biology
PhD
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
Mohammed
• 0
1
vote
3
replies
514
views
Forum:
Development plan for a bioinformatics database developer/coder
developer
9 weeks ago by
pixie@bioinfo
★ 1.5k
7
votes
8
replies
780
views
Forum:
Bioinformatics career transition
career
forum
updated 9 weeks ago by
jared.andrews07
★ 16k • written 9 weeks ago by
jevill17
▴ 20
4
votes
2
replies
533
views
Forum:
Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein
CAFA5
9 weeks ago by
Anatoly A.
▴ 10
6
votes
6
replies
811
views
Forum:
You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical
thought-experiment
10 weeks ago by
jared.andrews07
★ 16k
0
votes
0
replies
195
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
433
views
Forum:
What's the state of the art in bacterial whole genome alignment?
whole
genome
alignment
mauve
10 weeks ago by
Dave Carlson
★ 1.7k
33
votes
12
replies
1.1k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
11 weeks ago by
karlaarz
▴ 110
5
votes
4
replies
606
views
Forum:
Would reaching out to local labs and startups help with my career transition?
career
volunteering
updated 12 weeks ago by
GenoMax
142k • written 12 weeks ago by
Mango
▴ 10
1
vote
2
replies
404
views
Forum:
Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity
Career-Gap
career-reentry
updated 12 weeks ago by
ATpoint
82k • written 12 weeks ago by
ashaneev07
▴ 20
8
votes
7
replies
872
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 12 weeks ago by
emmanouil.a
▴ 120 • written 3 months ago by
harasharan
• 0
1
vote
0
replies
306
views
Forum:
list of bioinformatics tools in cancer genomics
mutations
CNA
cancer
genomics
LOH
updated 3 months ago by
Pierre Lindenbaum
161k • written 3 months ago by
Bogdan
★ 1.4k
4
votes
2
replies
405
views
Forum:
bulk seq vs. sc-seq
scATAC-seq
ATAC-seq
scRNAseq
RNAseq
updated 3 months ago by
dsull
★ 6.0k • written 3 months ago by
SebKittelmann
▴ 10
8
votes
6
replies
2.9k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
0
votes
0
replies
218
views
Forum:
tutorial for carrier screening analyses?
carrier-screening
updated 3 months ago by
Ram
43k • written 3 months ago by
Akos
▴ 20
2
votes
3
replies
460
views
Forum:
My Project
Project
CLI
MD-Simulations
Molecular-docking
3 months ago by
Ajay A Shettigar
• 0
17
votes
11
replies
1.0k
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by
sil_bioinfo
▴ 40
10
votes
7
replies
2.3k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 24 months ago by
sakichwan
▴ 20
26
votes
27
replies
2.2k
views
10 follow
Forum:
Determining computer time required
computer
hpc
time
updated 4 months ago by
dsull
★ 6.0k • written 4 months ago by
Rozita
▴ 40
7
votes
6
replies
773
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 4 months ago by
Ram
43k • written 4 months ago by
Petur
▴ 20
21
votes
12
replies
3.6k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
4 months ago by
Ram
43k
2
votes
1
reply
463
views
Forum:
Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist
transcriptomics
nanostring
xenium
visium
4 months ago by
LauferVA
4.2k
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 4 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
4
votes
3
replies
815
views
Forum:
How to get started in bioinformatics
students
updated 4 months ago by
Ram
43k • written 4 months ago by
Soidihane
▴ 10
2
votes
2
replies
606
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 4 months ago by
Ram
43k • written 4 months ago by
cwwong13
▴ 40
0
votes
2
replies
3.3k
views
Forum:
I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 4 months ago by
GenoMax
142k • written 4 months ago by
Mango
▴ 10
5
votes
3
replies
646
views
Forum:
Binning the rare biosphere
metagenomics
soil
assembly
techniques
binning
updated 5 months ago by
Mensur Dlakic
★ 27k • written 5 months ago by
Konstantin
▴ 20
6
votes
2
replies
692
views
Forum:
how to start Bioinformatics?
basics
updated 5 months ago by
Mensur Dlakic
★ 27k • written 5 months ago by
sajibsuvo70
• 0
19
votes
5
replies
1.2k
views
6 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics
snps
survey
papers
5 months ago by
Raony Guimarães
★ 1.4k
4
votes
6
replies
974
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by
Ram
43k • written 5 months ago by
Daniel
• 0
1
vote
1
reply
510
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 5 months ago by
Ram
43k • written 5 months ago by
Afeef
• 0
3
votes
5
replies
1.1k
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by
Ram
43k • written 6 months ago by
Paulo
• 0
21
votes
11
replies
2.6k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 14 months ago by
bompipi95
▴ 150
176
votes
46
replies
19k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
6 months ago by
Istvan Albert
100k
3
votes
2
replies
644
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 6 months ago by
fturner
▴ 10 • written 6 months ago by
sil_bioinfo
▴ 40
0
votes
0
replies
391
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 6 months ago by
Ram
43k • written 6 months ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.3k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by
tshtatland
▴ 190
7
votes
9
replies
1.5k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
6 months ago by
UT_FAN
▴ 40
0
votes
0
replies
480
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
7 months ago by
ishwarvh
• 0
0
votes
0
replies
371
views
Forum:
Automated Checks And QA
retrospective
7 months ago by
Sasha
▴ 840
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 7 months ago by
Ram
43k • written 7 months ago by
kieran
▴ 10
21
votes
7
replies
12k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 7 months ago by
Gennady Khvorykh
▴ 100 • written 8.1 years ago by
Sukhi Singh
11k
378 results • Page
1 of 8
Recent Votes
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
Comment: scRNAseq Differential expression analysis
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Recent Awards •
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Scholar
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dsull
★ 6.0k
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finswimmer
16k
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Ezequiel
• 0
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alanh
▴ 170
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Recent Replies
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot
by
bk11
★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool
by
GenoMax
142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
bk11
★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated
by
alanh
▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data?
by
Zhenyu Zhang
★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
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