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1,000 results • Page 3 of 20
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5
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4
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1.4k
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Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
0
votes
2
replies
997
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 17 months ago by 43k • written 19 months ago by • 0
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 12 months ago by 43k • written 18 months ago by • 0
2
votes
1
reply
880
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 16 months ago by 6.4k • written 19 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 12 months ago by 43k • written 19 months ago by 6.2k
2
votes
3
replies
960
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 20 months ago by 22k • written 20 months ago by ▴ 10
19
votes
13
replies
2.7k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.6k • written 20 months ago by ▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 20 months ago by 100k • written 20 months ago by ▴ 70
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 13 months ago by 43k • written 20 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
20 months ago by upasana • 0
3
votes
0
replies
832
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
21 months ago by LauferVA 4.2k
7
votes
14
replies
2.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 17 months ago by 43k • written 22 months ago by ★ 2.5k
2
votes
7
replies
1.3k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 22 months ago by 43k • written 22 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 22 months ago by 4.6k • written 22 months ago by 19k
0
votes
1
reply
639
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 22 months ago by 82k • written 22 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 17 months ago by 43k • written 22 months ago by 4.2k
0
votes
0
replies
755
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
22 months ago by goddy93 • 0
3
votes
1
reply
703
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 22 months ago by 43k • written 22 months ago by • 0
5
votes
2
replies
1.7k
views
Forum: Skills for industry career in bioinformatics
industry
updated 22 months ago by 13k • written 22 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 22 months ago by 9.7k • written 22 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
23 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
812
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
23 months ago by Francesco ▴ 20
3
votes
2
replies
865
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 43k • written 23 months ago by ▴ 50
0
votes
0
replies
762
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 17 months ago by 43k • written 23 months ago by ▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by 43k • written 23 months ago by 2.8k
0
votes
0
replies
654
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 17 months ago by 43k • written 23 months ago by ★ 1.5k
1
vote
3
replies
2.5k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 23 months ago by 3.9k • written 23 months ago by • 0
3
votes
3
replies
956
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 23 months ago by 27k • written 23 months ago by ★ 2.9k
0
votes
0
replies
380
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 17 months ago by 43k • written 23 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 24 months ago by 54k • written 24 months ago by ▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 21 months ago by 43k • written 8.5 years ago by ★ 9.4k
6
votes
8
replies
3.1k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
24 months ago by stan.aanhane ▴ 30
2
votes
3
replies
957
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by 43k • written 24 months ago by ▴ 30
2
votes
2
replies
953
views
Forum: Project ideas
project-ideas
updated 2.0 years ago by 54k • written 2.0 years ago by • 0
0
votes
0
replies
586
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
2.0 years ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 23 months ago by 43k • written 2.0 years ago by • 0
2
votes
2
replies
797
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 17 months ago by 43k • written 2.1 years ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
2.0 years ago by Scottie ▴ 10
4
votes
6
replies
1.6k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
2.1 years ago by Matthias Zepper 4.6k
0
votes
0
replies
630
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by 43k • written 2.1 years ago by ▴ 120
0
votes
0
replies
572
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.1 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 15 months ago by 43k • written 8.9 years ago by 100k
0
votes
1
reply
810
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.1 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.6k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 17 months ago by 43k • written 6.6 years ago by 54k
5
votes
8
replies
2.8k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 17 months ago by 43k • written 2.1 years ago by ▴ 10
1,000 results • Page 3 of 20
Recent Votes
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
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Recent Replies
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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