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1,000 results • Page
2 of 20
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Votes
Replies
0
votes
5
replies
371
views
Telescope issue
Telescope
RNA-seq
updated 4 days ago by
GenoMax
142k • written 5 days ago by
eleven11
• 0
1
vote
1
reply
232
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 5 days ago by
Ram
43k • written 5 days ago by
Jonathan Yoou
▴ 60
1
vote
2
replies
288
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
4 days ago by
Nafi
• 0
1
vote
3
replies
280
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 5 days ago by
GenoMax
142k • written 5 days ago by
jeffrey.maurer.informatics
• 0
0
votes
1
reply
186
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 4 days ago by
Adam
▴ 30 • written 5 days ago by
Ahiad Chen Zion
• 0
0
votes
0
replies
130
views
barcode of TCR-sequencing
barcode
5 days ago by
yueli7
▴ 250
0
votes
0
replies
126
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 5 days ago by
Ram
43k • written 5 days ago by
Alexandros
• 0
0
votes
1
reply
174
views
unable to get feature count results
featureCounts
updated 5 days ago by
Ram
43k • written 5 days ago by
Ravita
• 0
0
votes
3
replies
283
views
KEGG Pathways
r
RNA-seq
updated 5 days ago by
Ram
43k • written 5 days ago by
Sudip
• 0
0
votes
0
replies
133
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
5 days ago by
Bine
▴ 60
1
vote
2
replies
228
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 5 days ago by
Ram
43k • written 5 days ago by
Ravita
• 0
0
votes
0
replies
114
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
5 days ago by
Adyasha
• 0
0
votes
0
replies
115
views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome
gut
human
5 days ago by
fanglujing
▴ 60
0
votes
0
replies
133
views
Are some metagenomes too complex for MAGs?
metagenomics
metagenome
MAGs
assembly
6 days ago by
Jacob
• 0
0
votes
1
reply
183
views
Differential Accessibility
DiffBind
updated 6 days ago by
Ram
43k • written 6 days ago by
Shloka
• 0
0
votes
3
replies
293
views
Landmark gene selection in L1000.
L1000
landmark-gene
cmap
updated 5 days ago by
GenoMax
142k • written 6 days ago by
kim
• 0
3
votes
7
replies
346
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
6 days ago by
salias
• 0
0
votes
0
replies
126
views
Using limma in methylation EM-seq?
EM-seq
methylation
6 days ago by
Lluís R.
★ 1.2k
0
votes
0
replies
125
views
Synteny analysis
bacterial
synteny
genome
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Namil
• 0
0
votes
4
replies
262
views
Genbank File Format
gbkformat
5 days ago by
alenew.am
• 0
0
votes
0
replies
229
views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma
ArrayExpress
DifferentialExpression
GEOquery
6 days ago by
SSSJec
• 0
0
votes
3
replies
219
views
Software to separate reads from different individuals
software
development
nanopore
updated 6 days ago by
GenoMax
142k • written 6 days ago by
njornet
▴ 20
0
votes
0
replies
94
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
6 days ago by
David
• 0
0
votes
2
replies
229
views
How to update R on ubuntu
installation
update
R
apt-get
6 days ago by
Bosberg
▴ 50
0
votes
0
replies
109
views
LEfSe
LEfSe
6 days ago by
benkosta
• 0
0
votes
0
replies
90
views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq
DEXSeqDataSet
SGSeq
6 days ago by
Sara
▴ 30
0
votes
2
replies
161
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
6 days ago by
Lluís R.
★ 1.2k
0
votes
0
replies
103
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics
Mass
Bioinformatics
spectrometry
Proteins
6 days ago by
atharvakarkare14
▴ 30
0
votes
2
replies
206
views
What should I consider as FASTA for dataset?
PDB
FASTA
6 days ago by
Nafi
• 0
0
votes
0
replies
585
views
Differential accessibility using DiffBinf
diffbind
6 days ago by
Shloka
• 0
0
votes
0
replies
98
views
vg call vs vg surject
vg
variation
graphs
updated 6 days ago by
GenoMax
142k • written 6 days ago by
aliraza3119
• 0
0
votes
1
reply
139
views
Can I merge Hi-C fastq files from different lanes?
GenomeAssembly
BWA-MEM2
Hi-C
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Winter
• 0
0
votes
1
reply
214
views
Finding batch and outlayers
Pca
updated 6 days ago by
christopher medway
▴ 460 • written 7 days ago by
Tigran
• 0
2
votes
2
replies
206
views
PDB related issue
rcsb
pdb
updated 7 days ago by
noodle
▴ 580 • written 7 days ago by
Nafi
• 0
0
votes
9
replies
2.5k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome
base-calling
fastq
nanopore
updated 6 days ago by
Ram
43k • written 8 months ago by
Gio
• 0
1
vote
2
replies
215
views
Downloading full alignments from Pfam
pfam
13 hours ago by
bef1
• 0
0
votes
0
replies
124
views
adjusting for confounders in LMER in R
confounders
LMER
R
updated 6 days ago by
dariober
14k • written 7 days ago by
rene.j.erhardt
▴ 20
1
vote
3
replies
307
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 7 days ago by
ATpoint
82k • written 8 days ago by
Francesco
▴ 10
0
votes
0
replies
140
views
STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
8 days ago by
tnminh89
▴ 10
0
votes
0
replies
146
views
Filter low express genes in microarray data
microarray
8 days ago by
Chris
▴ 260
0
votes
0
replies
571
views
Correlation between cell type prediction scores and individual gene expression in spatial transcriptomic datasets
single-cell
Spatial-Transcriptomics
9 days ago by
biocellbio
• 0
0
votes
0
replies
206
views
Phasing VCF Files and Analyzing Reads with Multiple Variants
haplotypes
vcf
phasing
9 days ago by
HarperReed
• 0
1
vote
0
replies
161
views
Simulation of label-free bottom-up proteomics expression dataset
label-free
bottom-up
lc-ms
proteomics
9 days ago by
KABILAN
▴ 70
0
votes
0
replies
179
views
Running Phylogenetic Analysis With NCBI Genome
population-genetics
phylogenetic
updated 9 days ago by
Ram
43k • written 9 days ago by
SineWave
• 0
0
votes
0
replies
173
views
RNA-seq: full length gene
RNA-seq
updated 9 days ago by
Ram
43k • written 9 days ago by
Nargis
• 0
0
votes
0
replies
159
views
Haplotype Phased Assembly Contigs to Chromosome Annotations
Assembly
phased
Haplotype
Annotation
9 days ago by
turcoa1
• 0
0
votes
0
replies
171
views
Designing single-stable RNA molecules
structure
RNA
10 days ago by
Edna
• 0
0
votes
0
replies
183
views
How to visualize/predict the final transcript from Delly output?
WGS
DELLY
10 days ago by
simplitia
▴ 130
1
vote
1
reply
243
views
Normalize scRNAseq data to housekeeping genes to compare several datasets
RNA-sequencing
housekeeping
Single-cell
normalization
updated 10 days ago by
ATpoint
82k • written 10 days ago by
AaronJaime
• 0
0
votes
0
replies
165
views
How to calculate correlation coefficient for chipseq?
chipseq
bigwigsummary
correlation
10 days ago by
Emily
▴ 10
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