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News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
9 weeks ago by sina.majidian ▴ 20
1
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0
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178
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News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
10 weeks ago by David Langenberger 11k
1
vote
1
reply
229
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 10 weeks ago by 43k • written 10 weeks ago by • 0
0
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0
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213
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
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244
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News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
11 weeks ago by bioinformatics.ca • 0
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192
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News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
11 weeks ago by Sole • 0
0
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0
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217
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News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
11 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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280
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
11 weeks ago by carlopecoraro2 ★ 2.5k
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0
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256
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News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 11 weeks ago by 142k • written 11 weeks ago by • 0
0
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0
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277
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News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
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0
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229
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News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 2.5k
0
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0
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208
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News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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212
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News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 3 months ago by 142k • written 3 months ago by ▴ 10
0
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0
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198
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News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
3 months ago by David Langenberger 11k
0
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0
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212
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News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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195
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News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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193
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News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
3 months ago by Sole • 0
0
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1
reply
984
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News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
3 months ago by David Langenberger 11k
0
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242
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News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
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0
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208
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News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
3 months ago by Amos Bairoch ▴ 120
0
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0
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242
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News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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0
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265
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News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 410
0
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0
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248
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News: EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
3 months ago by EMBL Events ▴ 10
0
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0
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217
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News: Online course - Sex Chromosome Evolution
Evolution Genomics Sex-Chromosome
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
0
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1
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832
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News: LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS Online-Workshop
updated 4 months ago by 43k • written 4 months ago by 11k
7
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2
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1.2k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
0
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0
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251
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News: Online course: Generalized Additive Models (GAMs) in R
R Statistics Gams
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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279
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News: Online course - Introduction to Python for biologists
Python Programming NGSData
4 months ago by carlopecoraro2 ★ 2.5k
1
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0
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218
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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206
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News: Online course - Flow cytometry data analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
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1
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340
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News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
4
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0
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220
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News: Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq NGS Biologists OnlineCourse RNAseq
4 months ago by David Langenberger 11k
0
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0
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264
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News: 3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics reproducibility phylogenomics transcriptomics
4 months ago by carlopecoraro2 ★ 2.5k
0
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0
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586
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
written 14 months ago by ★ 2.5k
0
votes
1
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394
views
News: Online Course - Genomic Prediction
Genomic-Prediction Selective-Breeding
updated 4 months ago by 43k • written 4 months ago by ★ 2.5k
0
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0
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288
views
News: Flow cytometry data analysis with R/Bioconductor course
FlowCytometry R Bioconductor
4 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
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547
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
5 months ago by carlopecoraro2 ★ 2.5k
0
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0
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337
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News: Bayesian Data Analysis in R course
R Bayesian-Statistics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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345
views
News: Practical Hands-On Introduction to R course
R Tidyverse Data-Analysis
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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309
views
News: Landscape Genomics course at the EPFL in Lausanne, Switzerland
genomics Landscape-Genomics
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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295
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News: New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST NCBI BLAST
5 months ago by PeterC_NCBI ▴ 410
0
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0
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289
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News: Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R Gene-Set-Enrichment-Analysis GSEA Bioconductor
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
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0
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309
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News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression singlecell rnaseq
5 months ago by mia.nahom ▴ 10
0
votes
0
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286
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News: Online course: Introduction to Python, February 12th-March 11th, 2024
python courses
5 months ago by Sole • 0
0
votes
1
reply
392
views
News: Course: Genome Assembly and Annotation
Biodiversity Genome-Assembly Genome-Annotation Long-reads
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
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359
views
News: GWAS course
R GWAS
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
3
votes
0
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311
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
317
views
News: Course - Introduction to R Shiny
R Data-Visualisation Shiny
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
287
views
News: Online expert taught RNA-Seq workshop
workshop
5 months ago by fturner ▴ 10
0
votes
0
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332
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News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
760 results • Page 2 of 16
Recent Votes
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
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Recent Replies
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
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