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News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 14 months ago by 43k • written 10.6 years ago by 161k
2
votes
7
replies
1.7k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 140
12
votes
7
replies
3.9k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 14 months ago by 43k • written 9.6 years ago by ★ 5.2k
23
votes
7
replies
4.6k
views
News: Research accounts on GitHub
github git
updated 14 months ago by 43k • written 10.0 years ago by 161k
27
votes
7
replies
3.6k
views
News: The Biostar Swarm: A Visualization
biostars
updated 15 months ago by 43k • written 11.3 years ago by 100k
25
votes
7
replies
2.8k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 22 months ago by 43k • written 9.1 years ago by 161k
6
votes
7
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2.3k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 11 months ago by 43k • written 3.9 years ago by ▴ 40
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 12 months ago by 43k • written 6.5 years ago by ▴ 70
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 12 months ago by 43k • written 6.8 years ago by ▴ 130
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
32
votes
6
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13k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 14 months ago by 43k • written 10.3 years ago by 161k
3
votes
6
replies
2.7k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by 26k
17
votes
6
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9.0k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 14 months ago by 43k • written 10.1 years ago by 11k
1
vote
6
replies
1.2k
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 16 months ago by ▴ 100 • written 17 months ago by ★ 2.5k
14
votes
6
replies
7.1k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 17 months ago by 43k • written 8.9 years ago by 11k
9
votes
6
replies
2.2k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 16 months ago by 43k • written 9.0 years ago by ★ 1.2k
0
votes
5
replies
2.6k
views
News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 13 months ago by 43k • written 7.5 years ago by ★ 2.5k
6
votes
5
replies
5.3k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 13 months ago by 43k • written 7.7 years ago by 161k
3
votes
5
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2.3k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg gene-enrichment cancer gene-ontology
updated 13 months ago by 43k • written 7.7 years ago by 7.5k
9
votes
5
replies
10k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 15 months ago by 43k • written 6.7 years ago by 100k
9
votes
5
replies
3.7k
views
News: SAMTOOLS 1.4 released
samtools
updated 12 months ago by 43k • written 7.2 years ago by 161k
0
votes
5
replies
1.6k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by 11k
1
vote
5
replies
1.2k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 15 months ago by 43k • written 10.8 years ago by 54k
4
votes
5
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2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 13 months ago by 43k • written 8.0 years ago by ▴ 90
0
votes
5
replies
2.0k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 14 months ago by 43k • written 11.5 years ago by 12k
33
votes
5
replies
3.8k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 13 months ago by 43k • written 8.0 years ago by ▴ 460
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
9
votes
5
replies
8.8k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 14 months ago by 43k • written 11.5 years ago by ▴ 50
9
votes
5
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3.1k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 2.3 years ago by 43k • written 9.6 years ago by 26k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
7
votes
5
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2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
5
votes
4
replies
1.9k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 13 months ago by 43k • written 7.2 years ago by • 0
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
19
votes
4
replies
2.5k
views
News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 13 months ago by 43k • written 7.6 years ago by 11k
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 22 months ago by 43k • written 8.3 years ago by 11k
3
votes
4
replies
2.4k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 13 months ago by 43k • written 7.6 years ago by ▴ 140
1
vote
4
replies
1.8k
views
News: Bioconductor Development Visualization
bioconductor
updated 22 months ago by 43k • written 9.1 years ago by 26k
10
votes
4
replies
2.7k
views
News: Ensembl 77 is out
ensembl
updated 2.3 years ago by 43k • written 9.6 years ago by 23k
9
votes
4
replies
3.7k
views
News: Conference Announcement - Camda 2013
conference classification
updated 14 months ago by 43k • written 11.4 years ago by ▴ 240
10
votes
4
replies
1.0k
views
News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 88k
6
votes
4
replies
1.3k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
9
votes
4
replies
1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by ★ 1.8k
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 13 months ago by 43k • written 8.2 years ago by 23k
10
votes
4
replies
1.8k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.3 years ago by 11k
33
votes
4
replies
6.8k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by 43k • written 11.6 years ago by ▴ 330
12
votes
4
replies
2.1k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 6.0 years ago by ▴ 290
0
votes
4
replies
1.9k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 21 months ago by 43k • written 8.4 years ago by 11k
2
votes
4
replies
2.0k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.4k
1,000 results • Page 2 of 20
Recent Votes
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
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Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
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