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News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
6 months ago by Lars ★ 1.0k
0
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0
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332
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News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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3
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1.4k
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
6 months ago by David Langenberger 11k
0
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0
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370
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News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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328
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News: Genemod - Lab Management Software
lab-management-software research
updated 6 months ago by 43k • written 6 months ago by • 0
1
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0
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325
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News: course - Advanced Python Programming
Python-Programming
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
4
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2
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3.0k
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News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
0
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416
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News: GWAS course
R GWAS
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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348
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News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
3
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0
replies
580
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News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
0
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0
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344
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News: Course - Introduction to Machine Learning in R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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427
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News: Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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363
views
News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 6 months ago by 43k • written 6 months ago by ▴ 10
1
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0
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404
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News: course - Comparative Genomics
Comparative-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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418
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News: Online course Python Machine Learning in Biology, November 16, 2023
machine-learning python course
updated 6 months ago by 43k • written 6 months ago by • 0
122
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44
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11k
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24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 months ago by 43k • written 11.5 years ago by 100k
0
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0
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390
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News: Bioinformatics Phoenix
web-server
updated 6 months ago by 43k • written 6 months ago by • 0
1
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0
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332
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News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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346
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News: Course -Metabarcoding in Microbial Ecology
R Qiime2 Microbial-Ecology Metabarcoding
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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372
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News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 7 months ago by 43k • written 7 months ago by • 0
0
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0
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391
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News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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1
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1.2k
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
7 months ago by David Langenberger 11k
0
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1
reply
857
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
7 months ago by David Langenberger 11k
0
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0
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425
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News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
13
votes
9
replies
2.7k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
7 months ago by GenoMax 142k
0
votes
0
replies
384
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News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 7 months ago by 43k • written 7 months ago by ▴ 120
0
votes
0
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344
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News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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358
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News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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488
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News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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371
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News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 months ago by PeterC_NCBI ▴ 410
0
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0
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413
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News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
7 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
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634
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News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
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419
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News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
480
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
votes
0
replies
372
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News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
361
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
2
replies
941
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 8 months ago by ★ 1.7k • written 8 months ago by ▴ 110
0
votes
0
replies
353
views
News: Course - GLMMs in R
GLMM Mixed-Models
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
367
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
426
views
News: Genomic Prediction course
Genomic-Prediction GWAS
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
466
views
News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
0
votes
0
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399
views
News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
311
views
News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 7 months ago by 43k • written 8 months ago by • 0
0
votes
0
replies
341
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
357
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
2
replies
611
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
362
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
8 months ago by mia.nahom ▴ 10
0
votes
0
replies
327
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
364
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
1,000 results • Page 3 of 20
Recent Votes
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
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Recent Replies
Comment: What marks a De-Novo Genome assembly as FAILED? by dthorbur ★ 2.0k
I'm a little confused about your experimental design. Are you making 45 different assemblies? Or are all the samples from the same individu…
Comment: zero TPM for many gene including housekeeping when using kallisto by ATpoint 82k
You should be stating how you constructed the index, and include the actual lines for the problematic genes from the abundance files. Note …
Comment: zero TPM for many gene including housekeeping when using kallisto by dariober 14k
You could try [salmon](https://combine-lab.github.io/salmon/getting_started/) to see if the problem is with kallisto or with the pseudo-ali…
Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err by GenoMax 142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
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