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Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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Comment: GATK Structural Variants Pipeline - Steps
by
DGTool
▴
20
If it is just the tools that they used which you are looking for, the first link in the overview section of that page leads to the followin…
Comment: GO analysis: p-value range
by
Matthias Zepper
4.6k
It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
Comment: GO analysis: p-value range
by
marco.barr
▴
130
If you write me the code you used I can help you more
Comment: GO analysis: p-value range
by
sooni
▴
20
When I run the code, the following message appears:
Scale for y is already present.
Adding another scale for y, which will replace…
Comment: Why most genes have high padj values
by
mnx0723
•
0
In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
Comment: How to hide label in layout file of MCscan (python version)
by
jinyi
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Command line is as follows:
python -m jcvi.graphics.synteny Cs.Cm.i1.blocks Cs_Cm.bed layout2.txt
Comment: Add stats to the plot
by
marco.barr
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130
Thank you, it seems to be clearer. Your Condition already has two factorial levels. You can replace these names in groups 1 and 2.
da…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴
130
Hi, I also had the same problem. If you check its github page there have been no releases for many years and these errors cannot be fixed. …
Comment: Add stats to the plot
by
Ghada
•
0
Thanks, thats really helpful
![enter image description here][1]
![enter image description here][2]
[1]: /media/images/0470f3dc-5945-…
Comment: PCA Visualization error in R
by
marco.barr
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SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
Comment: Why most genes have high padj values
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ATpoint
82k
788 differential genes is a lot. What is the problem?
Comment: Why most genes have high padj values
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Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: GO analysis: p-value range
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marco.barr
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130
Try adding: `scale_y_continuous(breaks=seq(0, max_count, by=0.05))`
Comment: Functional enrichment analysis for unique gene IDs
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ATpoint
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If these genes do not have a symbol then it is utterly unlikely that anyone has looked at their function. I would get their Ensembl IDs and…
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