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0
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1
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619
views
Xenium multi sample data
Xenium batch-effect annotation
updated 4 months ago by 44k • written 6 months ago by ▴ 260
3
votes
3
replies
581
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk vcf liftover
updated 6 months ago by 44k • written 6 months ago by ▴ 260
0
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0
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529
views
cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
18 months ago by Omics data mining ▴ 260
0
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1
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899
views
Comment: Comment: Spatial transcriptome analysis
18 months ago by Omics data mining ▴ 260
0
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0
replies
2.2k
views
from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
18 months ago by Omics data mining ▴ 260
1
vote
1
reply
1.2k
views
Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated 19 months ago by ★ 1.8k • written 19 months ago by ▴ 260
0
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1
reply
572
views
pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated 19 months ago by ★ 3.0k • written 19 months ago by ▴ 260
0
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1
reply
788
views
Customizable pvalue scales in clusterprofiler
clusterprofiler
updated 19 months ago by 13k • written 19 months ago by ▴ 260
0
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0
replies
1.4k
views
Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
19 months ago by Omics data mining ▴ 260
2
votes
2
replies
1.4k
views
clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
19 months ago by Omics data mining ▴ 260
0
votes
0
replies
442
views
normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated 19 months ago by 44k • written 19 months ago by ▴ 260
0
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1
reply
1.4k
views
normalized score for SpatialFeaturePlot
Spatial Transcriptome normalization integration Seurat
updated 20 months ago by ★ 1.8k • written 20 months ago by ▴ 260
2
votes
1
reply
4.2k
views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
20 months ago by Omics data mining ▴ 260
0
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0
replies
806
views
Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
21 months ago by Omics data mining ▴ 260
1
vote
2
replies
806
views
Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
21 months ago by Omics data mining ▴ 260
1
vote
2
replies
799
views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated 22 months ago by ★ 4.5k • written 22 months ago by ▴ 260
0
votes
1
reply
2.2k
views
change color and scale in SpatialFeaturePlot
clustering Seurat spatial-transcriptome
updated 22 months ago by 44k • written 22 months ago by ▴ 260
0
votes
0
replies
1.3k
views
error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated 22 months ago by 44k • written 22 months ago by ▴ 260
2
votes
0
replies
698
views
Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential ATAC-Seq tobias motifs
22 months ago by Omics data mining ▴ 260
0
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0
replies
3.6k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
22 months ago by Omics data mining ▴ 260
0
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1
reply
3.6k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
22 months ago by Omics data mining ▴ 260
0
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1
reply
3.6k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
22 months ago by Omics data mining ▴ 260
1
vote
6
replies
3.6k
views
error in pipeline installation dependent on numpy version 1.18.5
cnn numpy imaging python
22 months ago by Omics data mining ▴ 260
3
votes
8
replies
6.9k
views
bait interval list for picard collecthsmetrices
picard alignment exome
19 months ago by Omics data mining ▴ 260
1
vote
1
reply
604
views
DESeq2 with multiple conditional data
multi differential DESeq2 genes factor
updated 23 months ago by 13k • written 23 months ago by ▴ 260
8
votes
6
replies
4.2k
views
How to include spatial coordinate data into anndata within scanpy
scanpy visium transcriptome spatial 10X
updated 10 months ago by • 0 • written 2.1 years ago by ▴ 260
1
vote
1
reply
668
views
Batch effect of sequencing data that were sequenced in different locations
DESeq2 batch-effect
updated 4 months ago by 44k • written 2.1 years ago by ▴ 260
0
votes
0
replies
552
views
Error plotting the markers in sc.pl.rank_genes_groups_dotplot
scanpy trasncriptome seurat spatial
2.1 years ago by Omics data mining ▴ 260
0
votes
1
reply
592
views
identification of overlapped, proximal and distal gene for peak regions
chip idenfication peak seq gene
updated 2.1 years ago by ▴ 410 • written 2.2 years ago by ▴ 260
0
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0
replies
1.3k
views
Comment: Comment: nested elements in bed file using awk
2.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
688
views
Comment: Comment: cluster identification and DEGs in single cell data
2.2 years ago by Omics data mining ▴ 260
1
vote
2
replies
688
views
cluster identification and DEGs in single cell data
deg cluster seurat analysis
2.2 years ago by Omics data mining ▴ 260
0
votes
2
replies
1.3k
views
Comment: Comment: nested elements in bed file using awk
2.2 years ago by Omics data mining ▴ 260
3
votes
6
replies
1.3k
views
nested elements in bed file using awk
coordinates bedops genome awk
2.2 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.1k
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
2.2 years ago by Omics data mining ▴ 260
4
votes
1
reply
1.5k
views
SCTransform in single cell
SCTransform seurat
updated 2.2 years ago by 147k • written 2.2 years ago by ▴ 260
0
votes
0
replies
803
views
Comment: Comment: overlap statistics among multiple bed files
2.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
622
views
Comment: Comment: exportFASTA not working
2.2 years ago by Omics data mining ▴ 260
0
votes
1
reply
803
views
Comment: Comment: overlap statistics among multiple bed files
2.2 years ago by Omics data mining ▴ 260
1
vote
4
replies
803
views
overlap statistics among multiple bed files
bedtools
updated 17 months ago by 44k • written 2.2 years ago by ▴ 260
0
votes
2
replies
622
views
exportFASTA not working
exportFASTA biomart getSeq
2.2 years ago by Omics data mining ▴ 260
0
votes
2
replies
646
views
Filteration of uniquely mapped reads
samtools bam
updated 17 months ago by 44k • written 2.2 years ago by ▴ 260
1
vote
0
replies
744
views
Comment: Comment: Identifying DEG's on Integrated samples
2.2 years ago by Omics data mining ▴ 260
1
vote
2
replies
1.1k
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
2.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
2.2k
views
Comment: Comment: conda env in snakemake
2.2 years ago by Omics data mining ▴ 260
0
votes
1
reply
2.2k
views
Comment: Comment: conda env in snakemake
2.2 years ago by Omics data mining ▴ 260
0
votes
4
replies
2.2k
views
conda env in snakemake
snakemake conda
2.2 years ago by Omics data mining ▴ 260
0
votes
1
reply
3.2k
views
SCTransform + Harmony in Seurat for batch correction
batch transcriptome spatial correction Seurat
updated 2.5 years ago by ▴ 10 • written 2.7 years ago by ▴ 260
0
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0
replies
689
views
Comment: Comment: from dexseq results to alternative splicing events identification
2.7 years ago by Omics data mining ▴ 260
0
votes
0
replies
503
views
calculate the variance across the samples
10X spatial cell single visium
2.7 years ago by Omics data mining ▴ 260
163 results • Page 1 of 4
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