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2
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689
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from dexseq results to alternative splicing events identification
dexseq alternative splicing
2.7 years ago by Omics data mining ▴ 260
0
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2
replies
976
views
Differential transcript usage from Salmon data
DTU rnaseqDTU transcript differential stageR
updated 23 months ago by ▴ 140 • written 2.7 years ago by ▴ 260
2
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3
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1.1k
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inter and intra-sample variance in 10X visium spatial transcriptome data
transcriptome cell single spatial
updated 2.2 years ago by 147k • written 2.8 years ago by ▴ 260
0
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0
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1.1k
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Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
updated 2.2 years ago by 147k • written 2.8 years ago by ▴ 260
0
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1
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1.5k
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Comment: Comment: unmapped reads from 10X visium spaceranger bam file
updated 2.8 years ago by 164k • written 2.8 years ago by ▴ 260
0
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1
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1.5k
views
Comment: Comment: unmapped reads from 10X visium spaceranger bam file
2.8 years ago by Omics data mining ▴ 260
0
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5
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1.5k
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unmapped reads from 10X visium spaceranger bam file
transcriptome 10X spatial visium
updated 2.8 years ago by 164k • written 2.8 years ago by ▴ 260
6
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4
replies
2.1k
views
gene set enrichment in clusterprofiler
clusterprofiler gene enrichment analysis set
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by ▴ 260
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0
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1.7k
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Comment: Comment: gseGO for multiple groups
2.8 years ago by Omics data mining ▴ 260
0
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2
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1.7k
views
gseGO for multiple groups
clusterProfiler gseKEGG gseGO
2.8 years ago by Omics data mining ▴ 260
1
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2
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1.6k
views
Upset plot in ComplexHeatmap
ComplexHeatmap Upsetplot
updated 2.8 years ago by ★ 18k • written 2.8 years ago by ▴ 260
0
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1
reply
1.0k
views
impulseDE2 input
normalized count input raw impulseDE2
updated 2.9 years ago by ▴ 210 • written 2.9 years ago by ▴ 260
0
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1
reply
1.2k
views
Comment: Comment: spatial 10X visum analysis
2.9 years ago by Omics data mining ▴ 260
0
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1
reply
6.3k
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Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
2.9 years ago by Omics data mining ▴ 260
0
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3
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1.2k
views
spatial 10X visum analysis
spatial 10X visium
updated 2.9 years ago by 13k • written 2.9 years ago by ▴ 260
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0
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8.5k
views
Comment: Comment: conversion of ensembl to gene_symbol in seurat
2.9 years ago by Omics data mining ▴ 260
0
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2
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8.5k
views
conversion of ensembl to gene_symbol in seurat
Seurat conversion spatial transcriptome
2.9 years ago by Omics data mining ▴ 260
0
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0
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2.2k
views
Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
3.0 years ago by Omics data mining ▴ 260
2
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4
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2.2k
views
UMI extraction from 10X visium spatial transcriptome data
umi_tools UMI spatial-transcriptome
updated 17 months ago by 44k • written 3.0 years ago by ▴ 260
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0
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2.2k
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Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
updated 3.0 years ago by 147k • written 3.0 years ago by ▴ 260
0
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0
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569
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Patient-to-patient similarities network
SNFtools multi omics
3.8 years ago by Omics data mining ▴ 260
0
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0
replies
643
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Error running gene expression based ProTINA
ProTINA Time-Series gene-expression
updated 18 months ago by 44k • written 4.0 years ago by ▴ 260
0
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2
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1.1k
views
Selection of SNPs after imputation
gwas imputation
updated 4.3 years ago by ▴ 140 • written 4.3 years ago by ▴ 260
0
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0
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1.2k
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GetPileupSummaries for each chromosome
GATK
4.3 years ago by Omics data mining ▴ 260
0
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1
reply
1.4k
views
Comment: C: minimum reads for the splicing event analysis ?
4.4 years ago by Omics data mining ▴ 260
1
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3
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1.4k
views
minimum reads for the splicing event analysis ?
alternative splicing isoform expression
updated 4.4 years ago by 15k • written 4.4 years ago by ▴ 260
0
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0
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771
views
include vcf header
varscan
4.8 years ago by Omics data mining ▴ 260
1
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0
replies
1.0k
views
TCGA data , filtration and normalization
genomics omics TCGA normalization
4.8 years ago by Omics data mining ▴ 260
2
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6
replies
4.6k
views
error while running vcf2maf
vcf2maf SNP rnaseq
updated 4.9 years ago by ▴ 190 • written 6.3 years ago by ▴ 260
0
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0
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1.6k
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Comment: A: input format file for DiscoSNP software run
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 260
0
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0
replies
5.1k
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Answer: A: Snp Discovery From De Novo Assembly
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 260
0
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1
reply
959
views
TCGA array expression and rnaseq expression batch correction
tcga rnaseq expression
5.2 years ago by Omics data mining ▴ 260
2
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2
replies
1.5k
views
Input for VariantsToBinaryPed
GATK plink
updated 5.2 years ago by 11k • written 6.4 years ago by ▴ 260
0
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0
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1.4k
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Multi samples (Normal and Tumor) somatic SNPs identification
GATK SNP VCF mutlisamplevcf whole-exom
5.2 years ago by Omics data mining ▴ 260
0
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1
reply
901
views
multi sample vcf to data matrix
VCF SNP GATK
updated 5.2 years ago by 85k • written 5.2 years ago by ▴ 260
1
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0
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3.6k
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Comment: C: TCGA survival data classification
5.2 years ago by Omics data mining ▴ 260
2
votes
2
replies
3.6k
views
TCGA survival data classification
TCGA survival
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 260
0
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3
replies
2.7k
views
ConsensusClusterPlus for small sample
ConsensusClusterPlus
updated 5.7 years ago by ▴ 400 • written 5.9 years ago by ▴ 260
0
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1
reply
1.4k
views
Answer: A: Merging variant calls of whole exome and RNA-seq
5.7 years ago by Omics data mining ▴ 260
0
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0
replies
940
views
Answer: C: Error of Netics : Multi omics intergration tool
5.7 years ago by Omics data mining ▴ 260
0
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1
reply
940
views
Error of Netics : Multi omics intergration tool
Netics multi omics integration
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 260
0
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2
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2.6k
views
Survival analysis based on gene expression
Survival gene expression
updated 5.8 years ago by 20 • written 5.8 years ago by ▴ 260
0
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0
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2.7k
views
Comment: C: ConsensusClusterPlus for small sample
5.9 years ago by Omics data mining ▴ 260
2
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2
replies
7.7k
views
genlist for clusterprofiler
clusterprofiler R bioconductor
updated 6.1 years ago by 12k • written 6.7 years ago by ▴ 260
0
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1
reply
1.9k
views
cytoscape subnetwork from WGCNA based modules
cytoscape TieDie subnetwork
updated 6.2 years ago by 44k • written 6.2 years ago by ▴ 260
0
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1
reply
2.0k
views
Comment: C: TCGA SNP data
6.3 years ago by Omics data mining ▴ 260
0
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1
reply
2.0k
views
Comment: C: TCGA SNP data
6.3 years ago by Omics data mining ▴ 260
0
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5
replies
2.0k
views
TCGA SNP data
TCGA maf2vcf SNPs PAAD
updated 6.3 years ago by 88k • written 6.3 years ago by ▴ 260
4
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2
replies
4.2k
views
how to create .gzi index
rnaseq genome
updated 6.3 years ago by ▴ 470 • written 6.3 years ago by ▴ 260
0
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0
replies
4.2k
views
Comment: C: how to create .gzi index
6.3 years ago by Omics data mining ▴ 260
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