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0
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220
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does genomics_general.py need both invariant sites and variant sites to calculate pi, FST and DXY
genomics_general
3 months ago by Maxine ▴ 50
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0
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458
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Comment: Comment: vg call is time consuming
8 months ago by Maxine ▴ 50
1
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2
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458
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vg call is time consuming
vg
8 months ago by Maxine ▴ 50
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1
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881
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Maxine ▴ 50
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1
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881
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Maxine ▴ 50
0
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1
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881
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Maxine ▴ 50
2
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7
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881
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Does vg call allow fuzzy match during SV calling?
vg
updated 8 months ago by ▴ 640 • written 8 months ago by ▴ 50
0
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0
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1.6k
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Comment: Comment: need interpretations for the vg call output
12 months ago by Maxine ▴ 50
2
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6
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1.6k
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need interpretations for the vg call output
vcf vg
12 months ago by Maxine ▴ 50
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1
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1.6k
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Comment: Comment: need interpretations for the vg call output
12 months ago by Maxine ▴ 50
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1
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1.6k
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Answer: Answer: need interpretations for the vg call output
12 months ago by Maxine ▴ 50
2
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4
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1.2k
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How to annotate function of genes from non-model organism
gene annotation
updated 13 months ago by ▴ 80 • written 13 months ago by ▴ 50
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1
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1.2k
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Comment: Comment: How to annotate function of genes from non-model organism
updated 13 months ago by 44k • written 13 months ago by ▴ 50
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0
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928
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Comment: Comment: tximport error: vroom
13 months ago by Maxine ▴ 50
2
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3
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928
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tximport error: vroom
tximport
13 months ago by Maxine ▴ 50
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
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0
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1.4k
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Answer: Answer: vg tools is running, but memory consumption is not happened and log files are no
15 months ago by Maxine ▴ 50
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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1
reply
3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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1
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
2
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20
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3.1k
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The number of SVs called by `vg call` is much smaller than the number of SVs in the VCF used to construct the graph
vg
14 months ago by Maxine ▴ 50
0
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2
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3.1k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
15 months ago by Maxine ▴ 50
0
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0
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1.8k
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Comment: Comment: Speed up vg call ?
15 months ago by Maxine ▴ 50
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1
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1.8k
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Comment: Comment: Speed up vg call ?
15 months ago by Maxine ▴ 50
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1
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1.8k
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Comment: Comment: Speed up vg call ?
16 months ago by Maxine ▴ 50
0
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1
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1.5k
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Comment: Comment: Why some insertions are symbolic in ALT column?
16 months ago by Maxine ▴ 50
0
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0
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1.4k
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Comment: Comment: population-level stratagy of vg call
16 months ago by Maxine ▴ 50
5
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5
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1.4k
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population-level stratagy of vg call
vg
16 months ago by Maxine ▴ 50
2
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7
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1.5k
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Why some insertions are symbolic in ALT column?
vcf sniffles
updated 15 months ago by • 0 • written 17 months ago by ▴ 50
0
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1
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3.1k
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Comment: Comment: SV calling using giraffe/vg
16 months ago by Maxine ▴ 50
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1
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1.4k
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Comment: Comment: vg map time consuming
16 months ago by Maxine ▴ 50
0
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1
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1.4k
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Comment: Comment: population-level stratagy of vg call
16 months ago by Maxine ▴ 50
0
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0
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1.4k
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Comment: Comment: vg map time consuming
16 months ago by Maxine ▴ 50
0
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1
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1.4k
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Comment: Comment: vg map time consuming
16 months ago by Maxine ▴ 50
0
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1
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1.4k
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Comment: Comment: vg map time consuming
16 months ago by Maxine ▴ 50
4
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9
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1.4k
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vg map time consuming
vg
updated 16 months ago by ▴ 520 • written 16 months ago by ▴ 50
3
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5
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1.2k
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unable to find most of SVs in constructed graph.vg
vg
updated 16 months ago by ▴ 520 • written 17 months ago by ▴ 50
0
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0
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1.2k
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Comment: Comment: unable to find most of SVs in constructed graph.vg
16 months ago by Maxine ▴ 50
0
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0
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1.2k
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Comment: Comment: unable to find most of SVs in constructed graph.vg
17 months ago by Maxine ▴ 50
0
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0
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1.5k
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Comment: Comment: Why some insertions are symbolic in ALT column?
17 months ago by Maxine ▴ 50
0
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0
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1.5k
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Comment: Comment: Why some insertions are symbolic in ALT column?
17 months ago by Maxine ▴ 50
0
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0
replies
406
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how to get the nucleotide squence behind a symbolic ALT in VCF
SV vcf sniffles
20 months ago by Maxine ▴ 50
0
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0
replies
640
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Comment: Comment: bayescan q values are generally higher than 0.05
2.1 years ago by Maxine ▴ 50
0
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1
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640
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bayescan q values are generally higher than 0.05
statistics bayescan
2.1 years ago by Maxine ▴ 50
0
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0
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631
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Comment: Comment: Is it possible to run bayescan with a splitted chromosome?
2.1 years ago by Maxine ▴ 50
0
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1
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1.5k
views
Comment: Comment: how do you know an SV is located in exton, intron or Intergenic region
2.2 years ago by Maxine ▴ 50
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