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208
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Bandage visualization of the transcriptome
Trinity transcriptomics Bandage RNA-seq
updated 8 weeks ago by 44k • written 8 weeks ago by ▴ 30
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594
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Comment: Comment: TaxID mapping file
6 months ago by Lada ▴ 30
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594
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Comment: Comment: TaxID mapping file
6 months ago by Lada ▴ 30
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3
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594
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
6 months ago by Lada ▴ 30
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743
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
7 months ago by Lada ▴ 30
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1
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743
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
7 months ago by Lada ▴ 30
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0
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743
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
7 months ago by Lada ▴ 30
2
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5
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743
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
7 months ago by Lada ▴ 30
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25k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
8 months ago by Lada ▴ 30
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0
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481
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 13 months ago by 44k • written 13 months ago by ▴ 30
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0
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374
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Salmon - mapping outputs
transcriptome RNAseq Salmon
13 months ago by Lada ▴ 30
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1.8k
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Comment: Comment: Providing multiple read files to Salmon
13 months ago by Lada ▴ 30
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1
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1.8k
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Comment: Comment: Providing multiple read files to Salmon
13 months ago by Lada ▴ 30
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1
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2.9k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
14 months ago by Lada ▴ 30
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2
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2.9k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
14 months ago by Lada ▴ 30
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0
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452
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OrthoPhy
orthophy orthofinder
updated 14 months ago by 44k • written 14 months ago by ▴ 30
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2
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2.9k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 14 months ago by 147k • written 15 months ago by ▴ 30
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0
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773
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Comment: Comment: ML tree inferred from multiple genes
15 months ago by Lada ▴ 30
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2
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773
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
15 months ago by Lada ▴ 30
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0
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978
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
15 months ago by Lada ▴ 30
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0
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1.0k
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Answer: Answer: Fossil calibration in PAML software?
15 months ago by Lada ▴ 30
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0
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1.2k
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Comment: Comment: Multiple sequence aligments - parallelisation
15 months ago by Lada ▴ 30
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1
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1.2k
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Comment: Comment: Multiple sequence aligments - parallelisation
15 months ago by Lada ▴ 30
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1
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1.2k
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Comment: Comment: Multiple sequence aligments - parallelisation
15 months ago by Lada ▴ 30
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5
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1.2k
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
15 months ago by Lada ▴ 30
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0
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1.1k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
15 months ago by Lada ▴ 30
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1.1k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
15 months ago by Lada ▴ 30
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5
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1.1k
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 15 months ago by 44k • written 15 months ago by ▴ 30
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1.1k
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Comment: Comment: EggNOG mapper annotation results
15 months ago by Lada ▴ 30
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1
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1.2k
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Comment: Comment: Comparative transcriptomics
18 months ago by Lada ▴ 30
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0
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587
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Comment: Comment: Corset -D parameter
20 months ago by Lada ▴ 30
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2
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587
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Corset -D parameter
RNAseq transcriptomic Corset
20 months ago by Lada ▴ 30
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0
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1.1k
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Comment: Comment: Salmon lib_format_counts.json - explanation
21 months ago by Lada ▴ 30
2
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2
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1.1k
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
21 months ago by Lada ▴ 30
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0
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580
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
21 months ago by Lada ▴ 30
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1
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580
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 21 months ago by 44k • written 21 months ago by ▴ 30
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1
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29k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
22 months ago by Lada ▴ 30
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0
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3.1k
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Comment: Comment: GSEA on nonmodel organisms
22 months ago by Lada ▴ 30
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0
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3.1k
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Comment: Comment: GSEA on nonmodel organisms
22 months ago by Lada ▴ 30
3
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4
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3.1k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
22 months ago by Lada ▴ 30
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0
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1.4k
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Comment: Comment: Differentially gene expression multispecies
22 months ago by Lada ▴ 30
1
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0
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648
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
22 months ago by Lada ▴ 30
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1
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1.2k
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Comment: Comment: Comparative transcriptomics
22 months ago by Lada ▴ 30
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0
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1.2k
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
22 months ago by Lada ▴ 30
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1
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1.9k
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Comment: Comment: Differential expression analysis
22 months ago by Lada ▴ 30
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0
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1.1k
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 22 months ago by 44k • written 22 months ago by ▴ 30
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0
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838
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Answer: Answer: Differential Expression Analyses between closely related species
22 months ago by Lada ▴ 30
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0
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826
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.7 years ago by Lada ▴ 30
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1
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826
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.7 years ago by Lada ▴ 30
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4
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826
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
2.7 years ago by Lada ▴ 30
51 results • Page 1 of 2
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