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1
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0
replies
326
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How to identify temporal differential gene expression patterns among cell types in scRNA-seq
gene-expression dynamic scRNA-seq DEGs
updated 10 weeks ago by 44k • written 10 weeks ago by ★ 1.3k
11
votes
1
reply
243
views
Cannot use more than 2 sample IDs when demultiplexing using Demuxlet
SNP variant demultiplexing Demuxlet scRNAseq
3 months ago by Chilly ★ 1.3k
7
votes
0
replies
243
views
Answer: Answer: Cannot use more than 2 sample IDs when demultiplexing using Demuxlet
3 months ago by Chilly ★ 1.3k
4
votes
0
replies
503
views
Comment: Comment: How to perform reciprocal best hit (RBH) when there are multiple versions of a p
3 months ago by Chilly ★ 1.3k
4
votes
1
reply
503
views
Comment: Comment: How to perform reciprocal best hit (RBH) when there are multiple versions of a p
3 months ago by Chilly ★ 1.3k
15
votes
4
replies
503
views
How to perform reciprocal best hit (RBH) when there are multiple versions of a protein sequence
reciprocal.best.hit protein sequence RBH blast
updated 3 months ago by 4.5k • written 3 months ago by ★ 1.3k
9
votes
1
reply
249
views
How can I find all GO term IDs related to transcription factor?
GO-term Transcription-Factor GO Gene-Ontology TF
updated 3 months ago by 44k • written 3 months ago by ★ 1.3k
5
votes
0
replies
249
views
Answer: Answer: How can I find all GO term IDs related to transcription factor?
3 months ago by Chilly ★ 1.3k
12
votes
3
replies
553
views
How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
R GFF3 fasta genome
updated 3 months ago by 44k • written 4 months ago by ★ 1.3k
6
votes
0
replies
553
views
Answer: Answer: How to use GFF3 annotation to split genome fasta into gene sequence fasta in R
3 months ago by Chilly ★ 1.3k
4
votes
0
replies
830
views
Comment: Comment: How to identify cell identities in mixed scRNA-seq using mutational signatures f
4 months ago by Chilly ★ 1.3k
4
votes
1
reply
830
views
Comment: Comment: How to identify cell identities in mixed scRNA-seq using mutational signatures f
4 months ago by Chilly ★ 1.3k
15
votes
4
replies
830
views
How to identify cell identities in mixed scRNA-seq using mutational signatures from bulk RNA-seq
RNA-seq scRNA-seq
4 months ago by Chilly ★ 1.3k
5
votes
1
reply
655
views
Single-end strand specific Rna-Seq: Which strand that the reads from.
mRNA Single-end strand-specific TruSeq
updated 15 months ago by ★ 1.9k • written 15 months ago by ★ 1.3k
4
votes
0
replies
767
views
Convert ONE pair-end BAM file to ONE single-end BAM file with merged mates (i.e. merging the paired reads coverage)
MACS2 BAM paired-end single-end
updated 16 months ago by 44k • written 2.1 years ago by ★ 1.3k
4
votes
0
replies
2.0k
views
Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.1 years ago by Chilly ★ 1.3k
4
votes
1
reply
2.0k
views
Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.1 years ago by Chilly ★ 1.3k
4
votes
1
reply
2.0k
views
Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
2.1 years ago by Chilly ★ 1.3k
17
votes
6
replies
2.0k
views
Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM)
Mutect2 RNA-seq mutation paired-end variant
2.1 years ago by Chilly ★ 1.3k
11
votes
1
reply
676
views
How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time from Bowtie2 (version 2.3.4.1 or high)?
RNA-seq pair-end concordantly bowtie2 alignment
2.2 years ago by Chilly ★ 1.3k
6
votes
0
replies
676
views
Answer: Answer: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time from Bowtie2 (ver
2.2 years ago by Chilly ★ 1.3k
0
votes
0
replies
25k
views
Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
2.2 years ago by Chilly ★ 1.3k
4
votes
1
reply
1.7k
views
Comment: Comment: What tools are available for downstream analysis of 10x scATAC-seq in entirely n
2.4 years ago by Chilly ★ 1.3k
4
votes
1
reply
1.7k
views
Comment: Comment: What tools are available for downstream analysis of 10x scATAC-seq in entirely n
2.4 years ago by Chilly ★ 1.3k
16
votes
6
replies
1.7k
views
What tools are available for downstream analysis of 10x scATAC-seq in entirely new organisms?
downstream 10x non-model scATAC
updated 16 months ago by • 0 • written 2.4 years ago by ★ 1.3k
7
votes
1
reply
640
views
How to apply a set of 8 fastq files produced by Paired-end NovaSeq to bowtie2 or bwa for alignment?
alignment NovaSeq bowtie fastq bwa
updated 2.4 years ago by 85k • written 2.4 years ago by ★ 1.3k
9
votes
2
replies
835
views
How to achieve dislocation comparison, filtering and fusion of adjacent rows in a data table in R
r matrix comparison filtering loop
2.5 years ago by Chilly ★ 1.3k
4
votes
1
reply
835
views
Comment: Comment: How to achieve dislocation comparison, filtering and fusion of adjacent rows in
2.5 years ago by Chilly ★ 1.3k
2
votes
0
replies
1.7k
views
Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
2.5 years ago by Chilly ★ 1.3k
19
votes
8
replies
1.7k
views
How to use R's loop to get the part of the aggregate matrix other than the many subset matrices?
aggregate r matrix loop subset
2.5 years ago by Chilly ★ 1.3k
4
votes
1
reply
1.7k
views
Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
2.5 years ago by Chilly ★ 1.3k
4
votes
1
reply
1.7k
views
Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
2.5 years ago by Chilly ★ 1.3k
4
votes
0
replies
938
views
how could I select low 'fraction fragments overlapping peaks' but 'high fragments per barcode' in scATAC-seq analysis?
cellranger ATAC-seq peak ATAC 10x
2.5 years ago by Chilly ★ 1.3k
5
votes
1
reply
753
views
How to use MARS-seq dataset for 10X scRNA-seq cluster annotation (i.e. convert the dataset to Seurat object)
10X MARS-seq scRNA-seq single-cell Seurat
updated 2.6 years ago by 85k • written 2.6 years ago by ★ 1.3k
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