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Answer: Answer: ChIPQC read depth doesn't match BAM files
2.5 years ago by Rory Stark ★ 2.1k
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6.1k
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Comment: Comment: "Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in se
2.5 years ago by Rory Stark ★ 2.1k
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4.0k
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Comment: Comment: Bam files not accepted in dba.count
2.6 years ago by Rory Stark ★ 2.1k
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3.5k
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Comment: Comment: DiffBind dba.count() BiocParallel error
2.6 years ago by Rory Stark ★ 2.1k
2
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1.6k
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Answer: Answer: Diffbind with <3 reps?
2.7 years ago by Rory Stark ★ 2.1k
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0
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3.7k
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Answer: Answer: Error in DiffBind. Please HELP!
2.7 years ago by Rory Stark ★ 2.1k
1
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1
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2.6k
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Answer: Answer: How to make a read count matrix from multiple bed files generated by ROSE
2.8 years ago by Rory Stark ★ 2.1k
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0
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1.6k
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Answer: Answer: DiffBind - Comparing normalization/background methods - how to create a heatmap
2.8 years ago by Rory Stark ★ 2.1k
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0
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1.0k
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Answer: Answer: DiffBind using static set of peaks for all samples
2.8 years ago by Rory Stark ★ 2.1k
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1
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1.8k
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Comment: Comment: DiffBind analysis report gives me two different outputs depending on when I appl
2.8 years ago by Rory Stark ★ 2.1k
2
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1
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1.8k
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Comment: Comment: DiffBind analysis report gives me two different outputs depending on when I appl
2.8 years ago by Rory Stark ★ 2.1k
2
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0
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820
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Answer: Answer: Why does DiffBind use the count of reads that fall within peaks?
2.9 years ago by Rory Stark ★ 2.1k
3
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1
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2.3k
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Answer: Answer: ATAC DiffBind: use peak or summit file?
2.9 years ago by Rory Stark ★ 2.1k
1
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1
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3.7k
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Comment: Comment: DiffBind missing peaks and FRiP
3.0 years ago by Rory Stark ★ 2.1k
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1
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3.7k
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Answer: Answer: DiffBind missing peaks and FRiP
3.0 years ago by Rory Stark ★ 2.1k
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1
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1.0k
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Answer: Answer: help for dba.count settings for RNAPII-ChIP using GRanges peakset
3.0 years ago by Rory Stark ★ 2.1k
3
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1
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2.0k
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Answer: Answer: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
3.0 years ago by Rory Stark ★ 2.1k
2
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1
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1.3k
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Answer: Answer: DiffBind normalization returned NULL
3.0 years ago by Rory Stark ★ 2.1k
3
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2
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3.1k
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Answer: Answer: Error with dba.count
3.0 years ago by Rory Stark ★ 2.1k
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1
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3.1k
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Comment: Comment: Error with dba.count
3.0 years ago by Rory Stark ★ 2.1k
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0
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3.1k
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Comment: Comment: Error with dba.count
3.0 years ago by Rory Stark ★ 2.1k
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0
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847
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Answer: Answer: How does diffbind extract the original coordinates of each difference peak
3.1 years ago by Rory Stark ★ 2.1k
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0
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1.4k
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Comment: Comment: diffbind dba.report error
3.1 years ago by Rory Stark ★ 2.1k
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1
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1.4k
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Answer: Answer: diffbind dba.report error
3.1 years ago by Rory Stark ★ 2.1k
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0
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1.7k
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Comment: Comment: DiffBind dba.count error Error in if (sum(tokeep) < length(tokeep))
3.1 years ago by Rory Stark ★ 2.1k
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0
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761
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Answer: Answer: standard deviation in DiffBind Consensus peaks
3.1 years ago by Rory Stark ★ 2.1k
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1
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1.7k
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Comment: Comment: DiffBind dba.count error Error in if (sum(tokeep) < length(tokeep))
3.1 years ago by Rory Stark ★ 2.1k
0
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0
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2.8k
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Comment: Comment: Diffbind3 dba.plotMA error
3.2 years ago by Rory Stark ★ 2.1k
1
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0
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1.3k
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Answer: Answer: DiffBind spike-in normalisation with varying amounts of spike-in chromatin
3.2 years ago by Rory Stark ★ 2.1k
3
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0
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4.8k
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Answer: Answer: why are all DiffBind tutorial's ATAC-seq peak intervals 400 bp for all intervals
3.2 years ago by Rory Stark ★ 2.1k
0
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0
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1.3k
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Answer: Answer: dba.count reduces binding matrix, why?
3.4 years ago by Rory Stark ★ 2.1k
0
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1
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5.2k
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Comment: Comment: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
3.4 years ago by Rory Stark ★ 2.1k
0
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1
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1.4k
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Answer: Answer: RPKM on TSS using DiffBind
3.5 years ago by Rory Stark ★ 2.1k
3
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1
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1.4k
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Answer: Answer: DiffBind - low number of significant peaks for one contrast
3.5 years ago by Rory Stark ★ 2.1k
2
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0
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2.6k
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Answer: Answer: Diffbind adding my own consensus peaks
3.5 years ago by Rory Stark ★ 2.1k
1
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0
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1.6k
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Answer: Answer: TMM normalization and sex effect
3.5 years ago by Rory Stark ★ 2.1k
1
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1
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1.8k
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Answer: Answer: DiffBind: dba.plotProfile() Change sample order
3.5 years ago by Rory Stark ★ 2.1k
0
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0
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6.3k
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Comment: Comment: Diffbind for ATAC-seq data with no controls
2.1 years ago by Rory Stark ★ 2.1k
0
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0
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4.1k
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Answer: Answer: Preparing ChIP-seq data for analysis with DESeq2
3.5 years ago by Rory Stark ★ 2.1k
0
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0
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3.7k
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Comment: Comment: Error in DiffBind. Please HELP!
3.6 years ago by Rory Stark ★ 2.1k
1
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1
reply
3.7k
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Comment: Comment: Error in DiffBind. Please HELP!
3.6 years ago by Rory Stark ★ 2.1k
1
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2
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3.7k
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Answer: Answer: Error in DiffBind. Please HELP!
3.6 years ago by Rory Stark ★ 2.1k
6
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3
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6.5k
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Answer: Answer: Which method is the best for using in "dba.count" in Diffbind R package
3.6 years ago by Rory Stark ★ 2.1k
9
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7
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3.4k
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Tool: DiffBind 3.0: Extensive updates in Bioconductor 3.12
DiffBind ChIP-Seq diffbind ATAC-seq chipseq
updated 20 months ago by 44k • written 4.3 years ago by ★ 2.1k
0
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0
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6.2k
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Answer: Answer: DiffBind 3.2 error
3.6 years ago by Rory Stark ★ 2.1k
0
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1
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2.8k
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Comment: Comment: Diffbind3 dba.plotMA error
3.6 years ago by Rory Stark ★ 2.1k
0
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1
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6.2k
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Comment: Comment: DiffBind 3.2 error
3.6 years ago by Rory Stark ★ 2.1k
2
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0
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1.7k
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Answer: Answer: Binding matrix created by DiffBind
3.7 years ago by Rory Stark ★ 2.1k
0
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0
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5.2k
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Comment: Comment: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
3.7 years ago by Rory Stark ★ 2.1k
0
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1
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2.9k
views
Comment: Comment: Diffbind:dba.plotProfile error: each range must have an end that is greater or e
3.7 years ago by Rory Stark ★ 2.1k
194 results • Page 2 of 4
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