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2
votes
2
replies
3.1k
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Should replicate analyses of ADMIXTURE all have the same cross-validation values
admixture
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 760
1
vote
1
reply
1.4k
views
When did SNP genotyping arrays first come into use in research?
SNP
updated 7.5 years ago by ★ 2.8k • written 7.5 years ago by ▴ 760
2
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1
reply
2.8k
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Answer: A: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.6 years ago by devenvyas ▴ 760
3
votes
9
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2.8k
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ANNOVAR is losing 886 SNPs, and I can't figure out why
SNP
7.6 years ago by devenvyas ▴ 760
0
votes
0
replies
2.8k
views
Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.6 years ago by devenvyas ▴ 760
0
votes
1
reply
2.8k
views
Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.6 years ago by devenvyas ▴ 760
0
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0
replies
2.5k
views
Answer: A: How to call mitochondrial SNP?
7.6 years ago by devenvyas ▴ 760
0
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1
reply
2.8k
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Comment: C: ANNOVAR is losing 886 SNPs, and I can't figure out why
7.6 years ago by devenvyas ▴ 760
0
votes
3
replies
1.9k
views
Need help plotting D statistics
R
7.6 years ago by devenvyas ▴ 760
0
votes
2
replies
2.8k
views
Using Sequin, cannot put in protein translation exception.
sequin genbank mitochondrial genome
updated 7.8 years ago by • 0 • written 10.1 years ago by ▴ 760
4
votes
7
replies
6.6k
views
Help making ADMIXTURE output digestible
admixture
updated 18 months ago by ▴ 20 • written 9.3 years ago by ▴ 760
0
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1
reply
3.1k
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Comment: C: Where can I upload SNP array data for public accessibility?
8.0 years ago by devenvyas ▴ 760
0
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1
reply
3.1k
views
Comment: C: Where can I upload SNP array data for public accessibility?
8.0 years ago by devenvyas ▴ 760
0
votes
1
reply
3.1k
views
Comment: C: Where can I upload SNP array data for public accessibility?
8.0 years ago by devenvyas ▴ 760
44
votes
11
replies
3.1k
views
6 follow
Forum: Why can't we downvote on this forum?
meta biostars
updated 19 months ago by 44k • written 8.0 years ago by ▴ 760
0
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1
reply
3.1k
views
Comment: C: Where can I upload SNP array data for public accessibility?
8.0 years ago by devenvyas ▴ 760
0
votes
1
reply
3.1k
views
Comment: C: Where can I upload SNP array data for public accessibility?
8.0 years ago by devenvyas ▴ 760
2
votes
11
replies
3.1k
views
Where can I upload SNP array data for public accessibility?
SNP
updated 8.0 years ago by ★ 5.0k • written 8.0 years ago by ▴ 760
1
vote
1
reply
3.1k
views
Comment: C: Why can't we downvote on this forum?
8.0 years ago by devenvyas ▴ 760
0
votes
0
replies
1.4k
views
Figuring out if populations from two regions share the same Neanderthal haplotypes...
snp
updated 8.1 years ago by 20 • written 8.3 years ago by ▴ 760
0
votes
7
replies
3.5k
views
Getting p-values for whether the allele frequencies from two or more populations for 1800 SNPs are different
snp
updated 8.2 years ago by ★ 1.2k • written 8.3 years ago by ▴ 760
0
votes
0
replies
3.5k
views
Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.2 years ago by devenvyas ▴ 760
0
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1
reply
3.5k
views
Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.3 years ago by devenvyas ▴ 760
0
votes
1
reply
1.4k
views
Comment: C: Figuring out which genes a set of SNPs overlap with
8.3 years ago by devenvyas ▴ 760
0
votes
3
replies
1.4k
views
Figuring out which genes a set of SNPs overlap with
gene SNP
updated 8.3 years ago by 47k • written 8.3 years ago by ▴ 760
0
votes
1
reply
3.5k
views
Comment: C: Getting p-values for whether the allele frequencies from two or more populations
8.3 years ago by devenvyas ▴ 760
3
votes
0
replies
6.5k
views
Answer: A: Good way to graph allele frequency of different SNPs along chromosomes
8.3 years ago by devenvyas ▴ 760
3
votes
3
replies
6.5k
views
Good way to graph allele frequency of different SNPs along chromosomes
SNP allele
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
6.5k
views
Comment: C: Good way to graph allele frequency of different SNPs along chromosomes
8.3 years ago by devenvyas ▴ 760
1
vote
1
reply
3.5k
views
Convert Plink files to UCSC BED files
snp UCSC
updated 8.3 years ago by 4.5k • written 8.3 years ago by ▴ 760
1
vote
0
replies
2.9k
views
Comment: C: Making a neighbor-joining tree of human populations based on mitochondrial DNA
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
5.4k
views
Comment: C: How does Plink choose which SNP is Allele1 and Allele2?
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
2.0k
views
Calculating allele frequency differences between two populations at sites across the genome
snp genome Plink
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
5.4k
views
Comment: C: How does Plink choose which SNP is Allele1 and Allele2?
8.3 years ago by devenvyas ▴ 760
1
vote
3
replies
5.4k
views
How does Plink choose which SNP is Allele1 and Allele2?
plink R
updated 8.3 years ago by 11k • written 8.3 years ago by ▴ 760
2
votes
4
replies
2.5k
views
Where do you cite R packages such as ggmap in a manuscript?
R
8.3 years ago by devenvyas ▴ 760
0
votes
1
reply
2.5k
views
Comment: A: Where do you cite R packages such as ggmap in a manuscript?
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
2.5k
views
Comment: C: Good repository for uploading SNP data (from genotyping array) alongside manuscr
8.3 years ago by devenvyas ▴ 760
3
votes
5
replies
2.5k
views
Good repository for uploading SNP data (from genotyping array) alongside manuscript?
SNP
8.3 years ago by devenvyas ▴ 760
0
votes
0
replies
2.5k
views
Answer: A: Good repository for uploading SNP data (from genotyping array) alongside manuscr
8.3 years ago by devenvyas ▴ 760
1
vote
4
replies
1.8k
views
Good text or video explaining what sequence alignment is to an undergrad
alignment
8.4 years ago by devenvyas ▴ 760
0
votes
0
replies
1.8k
views
Comment: A: Good text or video explaining what sequence alignment is to an undergrad
8.4 years ago by devenvyas ▴ 760
1
vote
1
reply
1.9k
views
How to compare Neanderthal ancestry blocks between two sets of populations using SNP data
Neanderthal SNP ancestry
updated 8.4 years ago by ★ 4.0k • written 8.6 years ago by ▴ 760
0
votes
0
replies
2.4k
views
Creating a tree from pairwise FST values for ADMIXTURE components
FST
8.4 years ago by devenvyas ▴ 760
1
vote
0
replies
15k
views
Comment: C: Generating an ADMIXTURE plot that stacks the different values of K using R
8.4 years ago by devenvyas ▴ 760
0
votes
0
replies
1.9k
views
Answer: A: How to compare Neanderthal ancestry blocks between two sets of populations using
8.4 years ago by devenvyas ▴ 760
0
votes
0
replies
1.8k
views
Filter VCF data to merge with SNP array data - good filter settings?
snp genome vcf plink
updated 8.5 years ago by 20 • written 8.6 years ago by ▴ 760
0
votes
0
replies
2.5k
views
Setting two outgroups in Treemix
treemix
8.5 years ago by devenvyas ▴ 760
2
votes
1
reply
2.1k
views
Does Treemix support multithreaded analyses?
treemix SNP
8.6 years ago by devenvyas ▴ 760
0
votes
0
replies
1.6k
views
Is there a way to filter Plink files based off a cluster file
SNP Plink
8.6 years ago by devenvyas ▴ 760
216 results • Page 2 of 5
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