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Filtering Plink files by coordinate as opposed to SNP id?
plink SNP
8.6 years ago by devenvyas ▴ 760
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0
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2.2k
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Comment: C: What are good settings to filter VCF files to merge SNP data with SNP array data
8.6 years ago by devenvyas ▴ 760
1
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2
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2.2k
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What are good settings to filter VCF files to merge SNP data with SNP array data
vcf SNP
updated 8.6 years ago by ★ 3.8k • written 8.6 years ago by ▴ 760
0
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0
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3.9k
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Comment: C: Why is my ADMIXTURE random seed always 43
8.8 years ago by devenvyas ▴ 760
3
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2
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3.9k
views
Why is my ADMIXTURE random seed always 43
ADMIXTURE
updated 8.8 years ago by 22k • written 8.8 years ago by ▴ 760
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1
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3.7k
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Comment: C: Scatter plot when there is a standard error for both axes
8.8 years ago by devenvyas ▴ 760
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0
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2.4k
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Comment: C: Perplexing ADMIXTURE results - one component present at K =10 disappears at 11,
8.8 years ago by devenvyas ▴ 760
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1
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2.1k
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Comment: C: Good way of plotting a statistic with error bars
8.9 years ago by devenvyas ▴ 760
1
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5
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2.1k
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Good way of plotting a statistic with error bars
plot
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 760
0
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2
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2.4k
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Perplexing ADMIXTURE results - one component present at K =10 disappears at 11, reappears at 12
SNP ADMIXTURE
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 760
3
votes
5
replies
5.5k
views
Downloading synonyms for dbSNP rsids
dbSNP SNP
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 760
0
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0
replies
1.6k
views
Seeking different methods of estimating Neanderthal ancestry in modern human SNP data
SNP Neanderthal admixtools
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 760
8
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13
replies
6.2k
views
6 follow
Updating dbSNP rs ids from old SNP data
snp dbSNP
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
1
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1
reply
4.4k
views
Filtering a VCF based on Map Quality
vcf SNP
updated 2.3 years ago by 44k • written 9.1 years ago by ▴ 760
0
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0
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2.3k
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Comment: C: Filtering down 1000 Genomes data just for a set of SNPs
9.1 years ago by devenvyas ▴ 760
2
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2
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2.3k
views
Filtering down 1000 Genomes data just for a set of SNPs
vcf SNP
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 760
2
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4
replies
4.4k
views
How to obtain ancestral alleles based on Hg19 genome coordinates?
SNP
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 760
0
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0
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2.1k
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Comment: C: Good way of obtaining Human-Chimp ancestral genotypes?
9.1 years ago by devenvyas ▴ 760
0
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0
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4.8k
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Comment: C: New to SNP data: I need help getting Affy Axiom data out of genotyping console i
9.1 years ago by devenvyas ▴ 760
1
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8
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3.5k
views
Efficient means of mass converting Affy SNP IDs to dbSNP rs ids
affy dbSNP Perl Bash Python
updated 22 months ago by 44k • written 9.5 years ago by ▴ 760
0
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0
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1.1k
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Comment: C: This website doesn't email me when one of my threads gets a response anymore
9.1 years ago by devenvyas ▴ 760
5
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2
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1.1k
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Forum: This website doesn't email me when one of my threads gets a response anymore
meta biostars
updated 20 months ago by 44k • written 9.1 years ago by ▴ 760
0
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1
reply
2.1k
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Good way of obtaining Human-Chimp ancestral genotypes?
SNP
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 760
1
vote
5
replies
4.8k
views
New to SNP data: I need help getting Affy Axiom data out of genotyping console into a Principle Component Analysis
Affymetrix SNP
updated 20 months ago by 44k • written 9.6 years ago by ▴ 760
0
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0
replies
1.9k
views
Looking for a quick way of consistently order components between different ADMIXTURE analyses
admixture
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 760
4
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2
replies
2.9k
views
Change output name for ADMIXTURE analysis
admixture
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 760
0
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1
reply
4.5k
views
What is a bad lowest-CV value for Admixture?
admixture SNP CV
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
1
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1
reply
6.2k
views
Comment: Comment: Updating dbSNP rs ids from old SNP data
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
0
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1
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6.2k
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Answer: A: Updating dbSNP rs ids from old SNP data
9.3 years ago by devenvyas ▴ 760
0
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1
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6.2k
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Comment: C: Updating dbSNP rs ids from old SNP data
9.3 years ago by devenvyas ▴ 760
0
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1
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6.2k
views
Comment: C: Updating dbSNP rs ids from old SNP data
9.3 years ago by devenvyas ▴ 760
0
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0
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3.2k
views
Set uniform bar widths for ADMIXTURE barplots in R
admixture R
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
0
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3
replies
4.7k
views
Plink file coded in 1/2/3/4 - how do I convert to ACGT
plink SNP
updated 24 months ago by 44k • written 9.4 years ago by ▴ 760
0
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1
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4.5k
views
Comment: C: ADMIXTURE results - how can I determine what SNPs are associated with different
9.3 years ago by devenvyas ▴ 760
0
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2
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4.5k
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Comment: C: ADMIXTURE results - how can I determine what SNPs are associated with different
9.3 years ago by devenvyas ▴ 760
4
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6
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4.5k
views
ADMIXTURE results - how can I determine what SNPs are associated with different inferred ancestry components?
SNP ADMIXTURE
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
0
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0
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6.0k
views
Comment: Comment: Setting dimensions of barplot area in R (for STRUCTURE-like plot)
9.3 years ago by devenvyas ▴ 760
0
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3
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6.0k
views
Setting dimensions of barplot area in R (for STRUCTURE-like plot)
R
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
0
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0
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6.0k
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Comment: Comment: Setting dimensions of barplot area in R (for STRUCTURE-like plot)
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 760
0
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0
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4.8k
views
Comment: C: How to tell Plink to merge based on Hg19 coordinates, not based on SNP ID
9.3 years ago by devenvyas ▴ 760
3
votes
4
replies
4.8k
views
How to tell Plink to merge based on Hg19 coordinates, not based on SNP ID
plink SNP
updated 9.3 years ago by ★ 2.4k • written 9.3 years ago by ▴ 760
0
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0
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4.8k
views
Comment: C: How to tell Plink to merge based on Hg19 coordinates, not based on SNP ID
9.3 years ago by devenvyas ▴ 760
0
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0
replies
2.0k
views
Changing sample phenotypes in Plink
plink SNP
9.3 years ago by devenvyas ▴ 760
0
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1
reply
4.7k
views
Comment: Comment: Plink file coded in 1/2/3/4 - how do I convert to ACGT
updated 24 months ago by 44k • written 9.4 years ago by ▴ 760
4
votes
0
replies
13k
views
Answer: Answer: What is a bad GATK Genotype Quality?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 760
2
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0
replies
13k
views
Comment: Comment: What is a bad GATK Genotype Quality?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 760
5
votes
4
replies
2.7k
views
Help merging VCF files divided by chromosome
vcf python
updated 23 months ago by 44k • written 9.4 years ago by ▴ 760
0
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0
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13k
views
Comment: C: What is a bad GATK Genotype Quality?
9.4 years ago by devenvyas ▴ 760
4
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0
replies
2.3k
views
Answer: Answer: Merging datasets from different arrays - need quick way to generate the intersec
updated 23 months ago by 44k • written 9.4 years ago by ▴ 760
5
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1
reply
2.3k
views
Merging datasets from different arrays - need quick way to generate the intersection of intersections
shell python SNP R
updated 23 months ago by 44k • written 9.4 years ago by ▴ 760
216 results • Page 3 of 5
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