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7
votes
3
replies
1.5k
views
Nextflow R Markdown render output to different directory: Missing output file(s)
rstudio r rmarkdown nextflow
updated 24 months ago by 86k • written 24 months ago by ▴ 350
2
votes
2
replies
1.0k
views
Rscript Nextflow Error: unable to load shared object
HPC R Nextflow
21 months ago by Eliveri ▴ 350
6
votes
5
replies
1.5k
views
Samtools equivalent of "CleanSam" Picard GATK?
picard samtools gatk
21 months ago by Eliveri ▴ 350
3
votes
3
replies
1.1k
views
SamSort gatk invalid argument / no space left on disk
picard gatk samsort nextflow
21 months ago by Eliveri ▴ 350
1
vote
0
replies
1.9k
views
Comment: Comment: Running Rscript in Nextflow (Rmd file not found)
2.0 years ago by Eliveri ▴ 350
7
votes
5
replies
1.9k
views
Running Rscript in Nextflow (Rmd file not found)
Rscript R Nextflow
21 months ago by Eliveri ▴ 350
3
votes
1
reply
1.3k
views
Trimmomatic adapter file not found when running using conda environment (Nextflow)
Conda Adapter Nextflow Trimmomatic environment
updated 2.1 years ago by 164k • written 2.1 years ago by ▴ 350
11
votes
4
replies
2.1k
views
How to select or subset process outputs in Nextflow DSL2?
DSL2 Nextflow
21 months ago by Eliveri ▴ 350
1
vote
0
replies
1.7k
views
Comment: Comment: Nextflow output from different processes mixed up as input in later processes
2.1 years ago by Eliveri ▴ 350
5
votes
3
replies
1.7k
views
Nextflow output from different processes mixed up as input in later processes
DSL2 process Nextflow
21 months ago by Eliveri ▴ 350
8
votes
4
replies
1.5k
views
Allocating memory for samtools sort in nextflow?
samtools nextflow
21 months ago by Eliveri ▴ 350
10
votes
2
replies
3.3k
views
How define Nextflow parameters (e.g. time/cpu/memory) in config or script?
Nextflow
updated 2.1 years ago by ▴ 600 • written 2.1 years ago by ▴ 350
4
votes
2
replies
874
views
Can you concatenate fastq.gz (zipped) and fastq (non-zipped) files?
fastq gzip
updated 2.1 years ago by 164k • written 2.1 years ago by ▴ 350
2
votes
1
reply
1.6k
views
Answer: Answer: BWA alignment failing after adding nextflow.config file?
2.1 years ago by Eliveri ▴ 350
0
votes
0
replies
1.6k
views
Comment: Comment: BWA alignment failing after adding nextflow.config file?
2.1 years ago by Eliveri ▴ 350
5
votes
4
replies
1.6k
views
BWA alignment failing after adding nextflow.config file?
cluster nextflow hpc meme bwa
updated 2.1 years ago by 86k • written 2.1 years ago by ▴ 350
1
vote
1
reply
1.0k
views
How to Choose Trimmomatic Min Length Parameter
Trimmomatic
updated 2.1 years ago by ★ 1.4k • written 2.1 years ago by ▴ 350
0
votes
0
replies
883
views
Comment: Comment: Match header (list) to sequence in fasta file quickly?
2.1 years ago by Eliveri ▴ 350
3
votes
3
replies
883
views
Match header (list) to sequence in fasta file quickly?
fasta grep
2.1 years ago by Eliveri ▴ 350
1
vote
1
reply
2.2k
views
Comment: Comment: Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
2.1 years ago by Eliveri ▴ 350
5
votes
6
replies
2.2k
views
Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
samtools bam bed
updated 18 months ago by 44k • written 2.1 years ago by ▴ 350
0
votes
0
replies
715
views
Comment: Comment: Filter out Bam not overlapping with Bed File?
2.1 years ago by Eliveri ▴ 350
3
votes
2
replies
715
views
Filter out Bam not overlapping with Bed File?
bed bam samtools
2.1 years ago by Eliveri ▴ 350
5
votes
4
replies
1.5k
views
Converting Bam file to Fasta (Zipped)
bedtools samtools
updated 18 months ago by 44k • written 2.2 years ago by ▴ 350
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