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Comment: C: HISAT2 and Stringtie: difference in Stringtie results when using pre-built index
7.6 years ago by iraun 6.2k
2
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9
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4.1k
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HISAT2 and Stringtie: difference in Stringtie results when using pre-built indexes or creating new ones in HISAT2
hisat2
7.6 years ago by iraun 6.2k
0
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1
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4.1k
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Comment: C: HISAT2 and Stringtie: difference in Stringtie results when using pre-built index
7.6 years ago by iraun 6.2k
0
votes
0
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4.1k
views
Comment: C: HISAT2 and Stringtie: difference in Stringtie results when using pre-built index
7.6 years ago by iraun 6.2k
1
vote
0
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3.8k
views
Comment: C: extracting Allele Read Counts
7.7 years ago by iraun 6.2k
2
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0
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9.4k
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Comment: C: how to filter vcf file based on sample DP? vcf tools does not work
7.7 years ago by iraun 6.2k
1
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1
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6.4k
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Comment: C: Strand specific pair end sequencing
7.7 years ago by iraun 6.2k
3
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1
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2.1k
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Answer: A: bam-readcount : Reference_base is not the base with highest count
7.7 years ago by iraun 6.2k
6
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5
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5.5k
views
scaffolding denovo contigs to genome
scaffolding denovo
updated 2.9 years ago by 44k • written 10.3 years ago by 6.2k
0
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0
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1.6k
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Answer: A: Oncotator Most Recent Version and Data Source
7.8 years ago by iraun 6.2k
1
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1
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3.3k
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bwa.kit: run-bwamem or bwa mem
bwa
7.8 years ago by iraun 6.2k
0
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0
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2.7k
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Comment: C: How to preprocess, normalize, decompose a VCF file before inputting to the SNPEf
7.8 years ago by iraun 6.2k
0
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0
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5.7k
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Comment: C: Bash- Sort a file based on a list in another file
7.9 years ago by iraun 6.2k
7
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2
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3.1k
views
Answer: C: Why is it absolutely necessary to filter a VCF?
7.9 years ago by iraun 6.2k
0
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0
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4.8k
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Comment: C: SNP annotation using gff3
7.9 years ago by iraun 6.2k
1
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0
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11k
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Answer: A: Grep the first match for each line of a pattern file
7.9 years ago by iraun 6.2k
2
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0
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11k
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Comment: C: Grep the first match for each line of a pattern file
7.9 years ago by iraun 6.2k
1
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2
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5.7k
views
Comment: C: Bash- Sort a file based on a list in another file
7.9 years ago by iraun 6.2k
0
votes
1
reply
5.7k
views
Comment: C: Bash- Sort a file based on a list in another file
7.9 years ago by iraun 6.2k
0
votes
1
reply
5.7k
views
Answer: A: Bash- Sort a file based on a list in another file
7.9 years ago by iraun 6.2k
1
vote
0
replies
5.7k
views
Comment: C: Bash- Sort a file based on a list in another file
7.9 years ago by iraun 6.2k
1
vote
1
reply
1.2k
views
Answer: A: attend the sequence length to the sequence name
8.0 years ago by iraun 6.2k
0
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0
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2.1k
views
Comment: C: paste columns into one line in command line
8.0 years ago by iraun 6.2k
1
vote
0
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2.0k
views
Answer: A: Why longer K-mer is better for de novo assembly of high abundant transcript and
8.1 years ago by iraun 6.2k
2
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0
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9.7k
views
Comment: C: Need to separate paired-end reads from single fastq file.
8.1 years ago by iraun 6.2k
2
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0
replies
2.5k
views
Comment: C: Exome-seq; Have tumor samples without matched normal/germline. How to get signif
8.1 years ago by iraun 6.2k
0
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0
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5.0k
views
Comment: C: How to check and extract if a SNP is heterozygous or homozygous in a vcf file fr
8.1 years ago by iraun 6.2k
6
votes
2
replies
6.4k
views
samtools v1.3: AD, ADF and ADR fields.
samtools sam format
8.1 years ago by iraun 6.2k
2
votes
4
replies
4.7k
views
How to verify the information stored in a GFF file
GFF Genome Annotation
updated 2.8 years ago by 44k • written 10.1 years ago by 6.2k
1
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1
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3.4k
views
Comment: C: Gene id to gene name mapping
8.4 years ago by iraun 6.2k
0
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1
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3.4k
views
Comment: C: Gene id to gene name mapping
8.4 years ago by iraun 6.2k
0
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1
reply
4.7k
views
Comment: C: STAR mapper: unrecoginzed parameter name "sjdbInsertSave" in input "genomeParame
8.4 years ago by iraun 6.2k
1
vote
0
replies
4.2k
views
Comment: C: How to make a barplot with error bars of counts from one gene between 2 conditio
8.4 years ago by iraun 6.2k
1
vote
0
replies
2.3k
views
Comment: C: Locus in my snps.vcf file
8.4 years ago by iraun 6.2k
0
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1
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2.1k
views
Comment: C: What is the difference between using "-f 0.5 -r" and "-f 0.5 -F 0.5" in bedtools
8.5 years ago by iraun 6.2k
2
votes
2
replies
4.2k
views
Comment: C: Sequence alignment in biopython
8.5 years ago by iraun 6.2k
1
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3
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5.8k
views
Answer: A: How to decide Kmer size for RNA seq analysis using Trinity
8.5 years ago by iraun 6.2k
0
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0
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5.5k
views
Answer: A: parsing a fastq file using biopython
8.5 years ago by iraun 6.2k
4
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0
replies
3.6k
views
Comment: C: Edit strings in FASTQ file
8.5 years ago by iraun 6.2k
1
vote
0
replies
5.0k
views
Answer: A: extract reads with given size range
8.5 years ago by iraun 6.2k
1
vote
0
replies
11k
views
Comment: C: samtools mpileup VCF output
8.6 years ago by iraun 6.2k
0
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0
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3.6k
views
Comment: C: Merge gtf file by coordinates
8.6 years ago by iraun 6.2k
1
vote
0
replies
17k
views
Answer: A: fasta - reverse complement sequence
8.6 years ago by iraun 6.2k
2
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1
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3.3k
views
Comment: C: How to remove duplicated sequences from multi fasta file?
8.6 years ago by iraun 6.2k
1
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0
replies
2.2k
views
Comment: C: I am trying to generate Haplotype using shapeit but everytime it says shapeit co
8.6 years ago by iraun 6.2k
1
vote
1
reply
2.5k
views
Comment: C: How to parse info field in Excel
8.6 years ago by iraun 6.2k
0
votes
1
reply
3.2k
views
Comment: C: Extracing the regions outside the target(transctip) region in genome
8.6 years ago by iraun 6.2k
0
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1
reply
3.2k
views
Comment: C: Extracing the regions outside the target(transctip) region in genome
8.6 years ago by iraun 6.2k
0
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1
reply
2.3k
views
Comment: C: ORF search gives negative start value
8.6 years ago by iraun 6.2k
0
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1
reply
2.3k
views
Comment: C: ORF search gives negative start value
8.6 years ago by iraun 6.2k
678 results • Page 8 of 14
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