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Comment: C: How to estimate the minimal amount of sequencing required for a biomarker analys
6.9 years ago by Charles Plessy ★ 2.9k
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Comment: C: Can loess.normalization be used for normalizing RNASeq performed with two ERCC m
6.9 years ago by Charles Plessy ★ 2.9k
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6
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How to estimate the minimal amount of sequencing required for a biomarker analysis ?
statistics biomarker
updated 6.9 years ago by ▴ 20 • written 6.9 years ago by ★ 2.9k
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Answer: A: Can anyone suggest a RShiny app for displaying RNA-seq results online
6.9 years ago by Charles Plessy ★ 2.9k
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1.7k
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Comment: C: How to estimate the minimal amount of sequencing required for a biomarker analys
6.9 years ago by Charles Plessy ★ 2.9k
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5.5k
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Answer: A: awk one line command
6.9 years ago by Charles Plessy ★ 2.9k
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6.2k
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Comment: C: Recommendations of Linux distros for beginners in bioinformatics
7.0 years ago by Charles Plessy ★ 2.9k
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6.2k
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Comment: C: Recommendations of Linux distros for beginners in bioinformatics
7.0 years ago by Charles Plessy ★ 2.9k
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Answer: A: Recommendations of Linux distros for beginners in bioinformatics
7.0 years ago by Charles Plessy ★ 2.9k
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18k
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Answer: A: What exactly is sequencing depth in RNAseq?
7.0 years ago by Charles Plessy ★ 2.9k
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1
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2.1k
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Comment: C: The push toward standardisation
7.0 years ago by Charles Plessy ★ 2.9k
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5.4k
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Comment: C: Minimal TPM threshold for qPCR measure of gene expression
7.0 years ago by Charles Plessy ★ 2.9k
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1
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5.4k
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Comment: C: Minimal TPM threshold for qPCR measure of gene expression
7.0 years ago by Charles Plessy ★ 2.9k
1
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1
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5.4k
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Answer: A: Minimal TPM threshold for qPCR measure of gene expression
7.0 years ago by Charles Plessy ★ 2.9k
3
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1
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2.1k
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Answer: A: The push toward standardisation
7.0 years ago by Charles Plessy ★ 2.9k
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0
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1.4k
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Answer: A: Help with Illumnina Headers
7.0 years ago by Charles Plessy ★ 2.9k
5
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1
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3.1k
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Answer: A: ERCC count matrix smart-seq2
7.1 years ago by Charles Plessy ★ 2.9k
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0
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1.8k
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Answer: A: Change list of consecutive genomic coordinates to intervals?
7.1 years ago by Charles Plessy ★ 2.9k
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1
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1.5k
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Comment: C: Must there be spaces after "ORIGIN" in GenBank records ?
7.1 years ago by Charles Plessy ★ 2.9k
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3
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1.5k
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Must there be spaces after "ORIGIN" in GenBank records ?
GenBank
7.1 years ago by Charles Plessy ★ 2.9k
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1
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9.6k
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Comment: C: Stranger Things: unexpected limitations of popular tools
7.1 years ago by Charles Plessy ★ 2.9k
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1
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9.6k
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Answer: A: Stranger Things: unexpected limitations of popular tools
7.1 years ago by Charles Plessy ★ 2.9k
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7.7k
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Comment: C: samtools installation errors
7.1 years ago by Charles Plessy ★ 2.9k
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11k
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Answer: A: rRNA detection (for contamination) in RNA-seq
7.1 years ago by Charles Plessy ★ 2.9k
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14k
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Comment: C: Removing PCR duplicates from .fastq without .bam alignment
7.2 years ago by Charles Plessy ★ 2.9k
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0
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1.4k
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An ontology for mapping statistics ?
ontology mapping QC
7.2 years ago by Charles Plessy ★ 2.9k
2
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0
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42k
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Comment: C: Transform a GTF file into a data frame in R
7.2 years ago by Charles Plessy ★ 2.9k
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0
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14k
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Comment: C: Renaming All Files In A Directory With A Perl Script
7.2 years ago by Charles Plessy ★ 2.9k
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0
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4.9k
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Comment: C: Genome Browser suggestions
7.2 years ago by Charles Plessy ★ 2.9k
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1
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4.9k
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Answer: A: Genome Browser suggestions
7.2 years ago by Charles Plessy ★ 2.9k
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12k
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Answer: A: How to save GRanges object to csv file
7.2 years ago by Charles Plessy ★ 2.9k
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0
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5.2k
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Answer: A: Find gene using nucleotide sequence position in R
7.2 years ago by Charles Plessy ★ 2.9k
2
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0
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2.0k
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Comment: C: Why is there a star in some primer sequences (library preparation)
7.3 years ago by Charles Plessy ★ 2.9k
4
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4
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3.8k
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Tool: pairedBamToBed12: converts paired-end BAM to BED12 format, based on bedtools
CAGE paired-end
updated 2.2 years ago by 44k • written 9.1 years ago by ★ 2.9k
0
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0
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2.5k
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Answer: A: Visualising indexed and sorted bam files
7.3 years ago by Charles Plessy ★ 2.9k
0
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0
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3.8k
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Answer: A: counting ERCCs spike-ins in RNAseq data
7.3 years ago by Charles Plessy ★ 2.9k
0
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0
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2.4k
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Answer: A: NCBI: dowload all genomes obtained from soil/marine/host associated bacteria/org
7.3 years ago by Charles Plessy ★ 2.9k
2
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0
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2.6k
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Answer: A: Using needle command with no output to the terminal
7.3 years ago by Charles Plessy ★ 2.9k
1
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0
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2.5k
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Answer: A: How to add last 20 nt to the beginning of reads?
7.3 years ago by Charles Plessy ★ 2.9k
1
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0
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6.4k
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Answer: A: Remove the last few bases from fasta sequences
7.4 years ago by Charles Plessy ★ 2.9k
1
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1
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4.2k
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Answer: A: Running Primer3 to give Tm values only
7.4 years ago by Charles Plessy ★ 2.9k
0
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1
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1.5k
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Answer: A: Define exact peak borders
7.4 years ago by Charles Plessy ★ 2.9k
3
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0
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1.4k
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Answer: A: mouse Cx30 promoter
7.4 years ago by Charles Plessy ★ 2.9k
0
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0
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19k
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Comment: C: Run Samtools on multiple files
7.4 years ago by Charles Plessy ★ 2.9k
2
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1
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19k
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Answer: A: Run Samtools on multiple files
7.4 years ago by Charles Plessy ★ 2.9k
0
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0
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2.4k
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Comment: C: "TRUE" instead of "T" allele in R
7.4 years ago by Charles Plessy ★ 2.9k
1
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0
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2.4k
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Comment: C: "TRUE" instead of "T" allele in R
7.4 years ago by Charles Plessy ★ 2.9k
6
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2
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2.4k
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Answer: A: "TRUE" instead of "T" allele in R
7.4 years ago by Charles Plessy ★ 2.9k
2
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1
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4.3k
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Answer: A: fastq_quality_trimmer: Premature End-Of-File
7.4 years ago by Charles Plessy ★ 2.9k
1
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0
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2.0k
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Answer: A: trying to identify all tss' for a mouse genomewide
7.4 years ago by Charles Plessy ★ 2.9k
283 results • Page 2 of 6
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