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Answer: Answer: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.4k
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Comment: Comment: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.4k
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0
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5.6k
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Answer: Answer: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 23 months ago by 44k • written 9.4 years ago by ★ 2.4k
6
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0
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Job: UPDATE: Postdoctoral Trainee in Bioinformatics supporting Integrated Genome Browser, University of North Carolina, USA
ChIP-Seq RNA-Seq igb
updated 20 months ago by 44k • written 10.4 years ago by ★ 2.4k
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Answer: A: Can IGB load BED 6+3 files?
9.6 years ago by Ann ★ 2.4k
0
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1
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2.7k
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Answer: Answer: is there a way to get splice sites from BLAST results?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.4k
2
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1
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4.6k
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Answer: Answer: Which genome browser to display bacterial draft genomes?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.4k
8
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0
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1.9k
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News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.4k
2
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3
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2.9k
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tophat GTF 2.2 format question
RNA-Seq tophat
updated 3.6 years ago by 44k • written 9.9 years ago by ★ 2.4k
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1
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5.3k
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Comment: Comment: Biology undergrad taking bioinformatics new to python need HELP with problem!
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.4k
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1
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8.8k
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Comment: Comment: How to convert GTF format to BED format?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.4k
7
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1
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2.9k
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News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.4k
0
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1
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3.3k
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Comment: Comment: Computational requirement to host a genome browser
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.4k
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1
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3.3k
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Comment: C: Computational requirement to host a genome browser
9.9 years ago by Ann ★ 2.4k
1
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1
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3.3k
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Answer: Answer: Computational requirement to host a genome browser
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.4k
0
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0
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2.9k
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Comment: Comment: tophat GTF 2.2 format question
updated 3.6 years ago by 44k • written 9.9 years ago by ★ 2.4k
5
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10
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6.7k
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need to separate read1 and read2 to run tophat2
RNA-Seq tophat2 pairedend
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
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0
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2.9k
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Comment: Comment: tophat GTF 2.2 format question
updated 3.6 years ago by 44k • written 9.9 years ago by ★ 2.4k
0
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1
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6.7k
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Comment: Comment: need to separate read1 and read2 to run tophat2
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
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0
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4.3k
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Answer: A: How to create your genome in IGV?
10.0 years ago by Ann ★ 2.4k
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0
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2.9k
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Comment: Comment: Integrate a Genome Browser into a Java application
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
11
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4
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6.3k
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R package used for PCA plotting in a paper (rice RNA-Seq)
PCA RNA-Seq R
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
4
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2
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2.9k
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Answer: Answer: Integrate a Genome Browser into a Java application
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
0
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0
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6.9k
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Answer: Answer: Should I log-transform microarray gene expression data before applying PCA?
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
2
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0
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3.9k
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Answer: Answer: IGB- genome sequence in sequence viewer just shows dashes
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.4k
0
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2
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3.1k
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Comment: Comment: Color / mark specific sequence bases differently in IGV
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
4
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0
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5.2k
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Answer: Answer: viewing BED Graph files on the IGB
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.4k
2
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0
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6.3k
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Answer: A: what are the control samples when using MACS to find ChiP-seq peaks?
10.0 years ago by Ann ★ 2.4k
8
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0
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26k
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Answer: Answer: Genomics is not Special. Computational Biologists are reinventing the wheel for
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.4k
3
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2
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1.8k
views
Forum: request for feature - show view count
feature
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.4k
2
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0
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2.3k
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News: Learn how to use IGB with Galaxy for RNA-Seq - Nov 12, 2014
igb galaxy RNA-Seq
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.4k
0
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0
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5.9k
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Comment: C: 23andme: Convert Human Assembly Build 36 to Build 37
10.0 years ago by Ann ★ 2.4k
3
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0
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2.5k
views
Answer: Answer: visualize tiling array file to IGB
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 2.4k
0
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1
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5.9k
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Answer: Answer: RNA probe ids from affymetrix
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 2.4k
1
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0
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3.1k
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Answer: Answer: Microarray data analysis for detecting alternative splicing
updated 3.6 years ago by 44k • written 10.1 years ago by ★ 2.4k
1
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1
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3.1k
views
Answer: Answer: Microarray data analysis for detecting alternative splicing
updated 3.6 years ago by 44k • written 10.1 years ago by ★ 2.4k
1
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1
reply
2.6k
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looking for plant ChIP-Seq data sets to try DiffBind (need replicates)
RNA-Seq DiffBind R ChIP-Seq
updated 3.7 years ago by 44k • written 10.1 years ago by ★ 2.4k
1
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0
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6.4k
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Comment: C: R packages for gene regulatory networks from time series data
10.1 years ago by Ann ★ 2.4k
0
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1
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6.4k
views
Comment: C: R packages for gene regulatory networks from time series data
10.1 years ago by Ann ★ 2.4k
8
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8
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1.9k
views
Forum: links back from twitter problem
meta twitter
updated 20 months ago by 44k • written 10.1 years ago by ★ 2.4k
3
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0
replies
1.8k
views
Forum: IGB hacks - trying out different colors for samples
genome-browser igv igb
updated 20 months ago by 44k • written 10.1 years ago by ★ 2.4k
1
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0
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1.3k
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News: Still some places available in IGB live tutorial - just started
igb genomebrowser splicing BAM
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 2.4k
0
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0
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2.1k
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Comment: Comment: National Institutes of Health tenure-track recruitment
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 2.4k
1
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2
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5.2k
views
Answer: Answer: An idea to identify batch effects
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 2.4k
8
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4
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2.0k
views
Forum: Please add tweet link to posts (update: you can now embed tweets)
meta biostars twitter
updated 20 months ago by 44k • written 10.4 years ago by ★ 2.4k
5
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3
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3.6k
views
how to get -nms for bedtools
bedtools
updated 2.9 years ago by 44k • written 10.3 years ago by ★ 2.4k
4
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1
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7.7k
views
Answer: A: Pathway Analysis Tool
10.3 years ago by Ann ★ 2.4k
0
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0
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2.8k
views
Comment: C: tophat2 reported the same alignment twice for the same read (paired end data)
10.4 years ago by Ann ★ 2.4k
2
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3
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2.8k
views
tophat2 reported the same alignment twice for the same read (paired end data)
paired-end RNA-Seq tophat tophat2 igb
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 2.4k
1
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1
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2.1k
views
tools for writing edge case BAM Files for testing
RNA-Seq python bam
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 2.4k
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