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Reference of Whole exome sequecing analysis
WES NGS variant calling mutation BWA
updated 4.7 years ago by 5.9k • written 4.7 years ago by ▴ 30
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1
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11k
views
Answer: A: Cutadapt On Windows
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 30
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0
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1.2k
views
How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
RNA-Seq assembly Trinity Transdecoder
updated 5.1 years ago by 20 • written 5.3 years ago by ▴ 30
4
votes
2
replies
1.8k
views
NCBI gene Dabase info extration
NCBI Gene Databe gene ontology
updated 5.1 years ago by ★ 3.8k • written 5.1 years ago by ▴ 30
1
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4
replies
1.1k
views
PCA for multiple transcriptome-assemblies
assembly rna-seq next-gen R
5.2 years ago by Shahzad ▴ 30
0
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0
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1.6k
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Comment: C: drmtools installation error
5.2 years ago by Shahzad ▴ 30
0
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1
reply
3.2k
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Comment: C: Extracting fasta sequences with identical header
5.2 years ago by Shahzad ▴ 30
0
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3
replies
1.6k
views
abundance_estimates_to_matrix.pl error while processing kallisto output
RNA-Seq denovo Assembly abundance_estimates
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 30
0
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1
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1.6k
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Comment: C: drmtools installation error
5.2 years ago by Shahzad ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: drmtools installation error
5.2 years ago by Shahzad ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: drmtools installation error
5.2 years ago by Shahzad ▴ 30
0
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1
reply
1.6k
views
Comment: C: drmtools installation error
5.2 years ago by Shahzad ▴ 30
4
votes
10
replies
1.6k
views
drmtools installation error
drmtools cmake make
updated 5.2 years ago by 147k • written 5.2 years ago by ▴ 30
0
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0
replies
1.1k
views
which file from the Transdecoder.predict to be used for cd-hit input?
sequencing RNA-Seq Assembly Transdecoder cd-hit
5.3 years ago by Shahzad ▴ 30
0
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1
reply
4.5k
views
Comment: C: Filtering fasta file based on identifier
5.3 years ago by Shahzad ▴ 30
0
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0
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3.2k
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Comment: Comment: Is there any tool to convert blastx format from tabular to xml for feeding it to
updated 2.1 years ago by 44k • written 5.3 years ago by ▴ 30
0
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1
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1.6k
views
Comment: A: abundance_estimates_to_matrix.pl error while processing kallisto output
5.3 years ago by Shahzad ▴ 30
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0
replies
6.4k
views
Comment: C: how to extract the longest isoform from trinity outfils
5.4 years ago by Shahzad ▴ 30
0
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1
reply
6.4k
views
Comment: A: how to extract the longest isoform from trinity outfils
updated 5.4 years ago by 147k • written 5.4 years ago by ▴ 30
0
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1
reply
3.8k
views
Comment: C: how to extract counts from bam/merge-bam without gtf
6.1 years ago by Shahzad ▴ 30
3
votes
5
replies
3.8k
views
how to extract counts from bam/merge-bam without gtf
RNA-Seq R bowtie2 samtools Hisat2
updated 6.1 years ago by ★ 3.9k • written 6.1 years ago by ▴ 30
0
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0
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3.8k
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Comment: C: how to extract counts from bam/merge-bam without gtf
6.1 years ago by Shahzad ▴ 30
0
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0
replies
6.5k
views
Comment: C: hisat2 and RSEM pipeline
6.1 years ago by Shahzad ▴ 30
1
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3
replies
6.5k
views
hisat2 and RSEM pipeline
rna-seq software error hisat2 gtf RSEM
updated 6.1 years ago by 7.6k • written 6.1 years ago by ▴ 30
0
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0
replies
6.0k
views
Comment: C: Can I use own transcriptome without GTF file?
6.1 years ago by Shahzad ▴ 30
0
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1
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16k
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Comment: C: Sort bam file by coordinates using samtools
6.2 years ago by Shahzad ▴ 30
0
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1
reply
16k
views
Comment: C: Sort bam file by coordinates using samtools
updated 6.2 years ago by 47k • written 6.2 years ago by ▴ 30
0
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1
reply
16k
views
Comment: C: Sort bam file by coordinates using samtools
updated 6.2 years ago by 5.3k • written 6.2 years ago by ▴ 30
9
votes
13
replies
16k
views
Sort bam file by coordinates using samtools
next-gen-sequencing gene rna-seq
updated 17 months ago by 44k • written 6.2 years ago by ▴ 30
0
votes
3
replies
16k
views
Comment: C: Sort bam file by coordinates using samtools
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 30
3
votes
3
replies
4.5k
views
miRNA target prediction tools
miRNA-target-prediction Virus virus-genome miRNA
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 30
1
vote
4
replies
4.2k
views
How to split SRA/fastq files
RNA-Seq next-gen fastq
updated 7.1 years ago by ▴ 310 • written 8.5 years ago by ▴ 30
8
votes
12
replies
15k
views
7 follow
FastQC not making html output report.
RNA-Seq FastQC QC Adapter Trim NGS
updated 7.2 years ago by 8.7k • written 8.6 years ago by ▴ 30
0
votes
0
replies
4.3k
views
Trinity Error, not recognizing read name formatting: [1]
RNA-Seq De Novo Transcriptome Trinity Assembly
7.2 years ago by Shahzad ▴ 30
0
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0
replies
22k
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Comment: C: Multiple Alignment: Protein Or Nucleotide Sequence?
7.8 years ago by Shahzad ▴ 30
0
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0
replies
15k
views
Comment: C: FastQC not making html output report.
7.9 years ago by Shahzad ▴ 30
1
vote
3
replies
2.4k
views
How to identify the different varieties of same species in Plants?
genome sequencing sequence next-gen
updated 8.0 years ago by ★ 3.6k • written 8.0 years ago by ▴ 30
0
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1
reply
8.1k
views
Answer: A: How to add tophat and bowtie to the path?
8.0 years ago by Shahzad ▴ 30
0
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0
replies
2.4k
views
Comment: C: How to identify the different varieties of same species in Plants?
8.0 years ago by Shahzad ▴ 30
0
votes
2
replies
200k
views
Comment: C: How To Deal With Duplicate Row Names Error In R
8.2 years ago by Shahzad ▴ 30
0
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1
reply
2.4k
views
Comment: C: How to identify the miRNA counts column?
8.2 years ago by Shahzad ▴ 30
1
vote
3
replies
2.4k
views
How to identify the miRNA counts column?
counts miRNA NGS biostat bedtools
8.2 years ago by Shahzad ▴ 30
0
votes
1
reply
2.0k
views
Comment: C: SortMeRNA starts, pauses, never finishes
8.2 years ago by Shahzad ▴ 30
0
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0
replies
1.9k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
8.2 years ago by Shahzad ▴ 30
0
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0
replies
1.9k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
8.2 years ago by Shahzad ▴ 30
5
votes
6
replies
1.9k
views
How to sequence a gene along with its 3' and 5' UTR
gene sequence UTRs
updated 8.2 years ago by 8.9k • written 8.2 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
8.2 years ago by Shahzad ▴ 30
0
votes
0
replies
4.2k
views
Comment: C: How to split SRA/fastq files
8.5 years ago by Shahzad ▴ 30
0
votes
0
replies
15k
views
Answer: A: How to get counts of STAR output (sam/bam).
8.5 years ago by Shahzad ▴ 30
9
votes
7
replies
15k
views
How to get counts of STAR output (sam/bam).
RNA-Seq rna-seq alignment Assembly genome
8.5 years ago by Shahzad ▴ 30
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