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Comment: C: How can I make all tracks on genome browser always scale relative to each other?
8.7 years ago by tiago211287 ★ 1.5k
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2
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How can I make all tracks on genome browser always scale relative to each other?
genome browser rnaseq
8.7 years ago by tiago211287 ★ 1.5k
4
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2
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2.6k
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BINGO plugin in cytoscape giving empty output
Bingo cytoscape
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 1.5k
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1
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5.5k
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Comment: C: How can I know what genes each Trinity ID are ?
8.9 years ago by tiago211287 ★ 1.5k
5
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8
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5.5k
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How can I know what genes each Trinity ID are ?
Blat Trinity Denovo assembly rnaseq
updated 8.9 years ago by ▴ 950 • written 8.9 years ago by ★ 1.5k
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Comment: C: How can I know what genes each Trinity ID are ?
8.9 years ago by tiago211287 ★ 1.5k
2
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0
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1.5k
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EXPRTOGTC module from cufflinks
cufflinks expr
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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2
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2.6k
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ggbio package only works with h19 genome
RNA-Seq ggplot2 R ggbio
updated 2.3 years ago by 44k • written 9.1 years ago by ★ 1.5k
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1
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2.0k
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Comment: C: Dataset normalization before gene ontology analysis
9.1 years ago by tiago211287 ★ 1.5k
1
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3
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2.0k
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Dataset normalization before gene ontology analysis
Gene ontology Normalization RNA-Seq bioconductor
updated 9.1 years ago by ▴ 790 • written 9.1 years ago by ★ 1.5k
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2
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4.3k
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Comment: C: RNA Normalization from DESeq to RPKM
9.1 years ago by tiago211287 ★ 1.5k
4
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3
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5.6k
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GO analysis and the universe set of genes
GO R
updated 2.2 years ago by 44k • written 9.1 years ago by ★ 1.5k
2
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1
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1.9k
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Cuffcompare protocol, error of sintax in awk command
RNA-Seq cuffcompare awk
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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0
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3.9k
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Comment: C: What can STAR-Fusion do ?
9.2 years ago by tiago211287 ★ 1.5k
0
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1
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14k
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Comment: C: Counting number of genes using htseq-count tool.
9.2 years ago by tiago211287 ★ 1.5k
0
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1
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3.9k
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Comment: C: What can STAR-Fusion do ?
9.2 years ago by tiago211287 ★ 1.5k
0
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4
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3.9k
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What can STAR-Fusion do ?
star star-fusion
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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1
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14k
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Comment: Comment: Counting number of genes using htseq-count tool.
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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1
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14k
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Answer: Answer: Counting number of genes using htseq-count tool.
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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0
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1.2k
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Comment: C: RNAseq guidelines reference
9.2 years ago by tiago211287 ★ 1.5k
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3.4k
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Answer: A: count reads with samtools view
9.2 years ago by tiago211287 ★ 1.5k
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0
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3.6k
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Comment: Comment: DeSeq2 data transformation for visualization
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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1
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2.4k
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Comment: C: Publications with poor sequencing data
9.2 years ago by tiago211287 ★ 1.5k
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1
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2.4k
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Comment: Comment: Publications with poor sequencing data
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
3
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1
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4.2k
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Answer: Answer: Question about the DESeq2: log2foldchange contradictory
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
3
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2
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4.2k
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Question about the DESeq2: log2foldchange contradictory
RNA-Seq R Deseq2
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
1
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0
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Answer: Answer: find the gene islands
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
5
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2
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2.2k
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Answer: Answer: about editing SAM/BAM files
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
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1
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5.4k
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Comment: Comment: What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguou
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
3
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4
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5.4k
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What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
RNA-Seq
updated 16 months ago by ▴ 10 • written 9.2 years ago by ★ 1.5k
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Comment: C: having up-regulated and down-regulated isoforms in Trinity output
9.2 years ago by tiago211287 ★ 1.5k
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0
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3.9k
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Comment: Comment: How to get the full gene name for a gene abbreviation list?
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
2
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0
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1.9k
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Answer: Answer: Cuffcompare protocol, error of sintax in awk command
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 1.5k
1
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0
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16k
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Answer: Answer: GO analysis- analyze upregulated and downregulated genes separately?
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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1
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2.0k
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Comment: C: Exome-seq: many reads with mate pair mapping to different chromosome
9.3 years ago by tiago211287 ★ 1.5k
1
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0
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3.5k
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What is the definition of a transfrag? What is a transfrag? EDIT:(And faux-read?)
k-mer transfrag cuffcompare RNA-Seq cufflinks
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 1.5k
1
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0
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28k
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Comment: C: ggplot2 graphs are empty
9.3 years ago by tiago211287 ★ 1.5k
0
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1
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4.3k
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Comment: Comment: DEseq with 3 replicates and two conditions
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 1.5k
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0
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2.2k
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Answer: Answer: How to profile non-coding sequencing based on NONCODE and RNAseq data
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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1
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3.4k
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Comment: Comment: Low final mapping rate by TopHat in spite of high initial Bowtie mapping
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
1
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0
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7.5k
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Comment: C: Informatics of RNA-Seq.
9.3 years ago by tiago211287 ★ 1.5k
1
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0
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3.4k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.3 years ago by tiago211287 ★ 1.5k
0
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0
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1.8k
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Comment: Comment: Recent RNA-Seq Analysis reviews
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
3
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13
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3.4k
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6 follow
What does it mean that: 100% of my alignment are discordant?
tophat alignment rna-seq
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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0
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9.0k
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Comment: C: Merging bed files
9.3 years ago by tiago211287 ★ 1.5k
0
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0
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1.9k
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Comment: Comment: Same alignment but with different output on tophat2, any ideas?
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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1
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3.4k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.3 years ago by tiago211287 ★ 1.5k
0
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1
reply
9.0k
views
Answer: Answer: Merging bed files
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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2
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3.4k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.3 years ago by tiago211287 ★ 1.5k
0
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0
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3.4k
views
Comment: Comment: What does it mean that: 100% of my alignment are discordant?
updated 2.8 years ago by 44k • written 9.3 years ago by ★ 1.5k
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