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Comment: C: Question: Normalization of read counts for Metagenomics data
7.2 years ago by Renesh ★ 2.2k
5
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2
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9.7k
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Answer: A: Split the multiple sequences file into a separate files
7.2 years ago by Renesh ★ 2.2k
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116k
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Comment: A: Which Expression Units To Use, Fpkm Or Rpkm ?
7.2 years ago by Renesh ★ 2.2k
3
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2.7k
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Answer: A: Hypergeometric test - Defining the gene universe
7.2 years ago by Renesh ★ 2.2k
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1.8k
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Answer: A: [Please share] How do you keep your NGS data analysis methods/ strategies up to
7.2 years ago by Renesh ★ 2.2k
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2.0k
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Comment: C: Seq. depth for DE analysis
7.2 years ago by Renesh ★ 2.2k
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1
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2.0k
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Answer: A: Seq. depth for DE analysis
7.2 years ago by Renesh ★ 2.2k
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1
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9.6k
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Comment: C: Coefficient of variation
7.2 years ago by Renesh ★ 2.2k
3
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1
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9.6k
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Answer: A: Coefficient of variation
7.2 years ago by Renesh ★ 2.2k
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5.4k
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Answer: A: Organism name from accession numbers
7.2 years ago by Renesh ★ 2.2k
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2.9k
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Comment: C: How to split columns into rows based on gene ids in R?
7.2 years ago by Renesh ★ 2.2k
1
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1
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2.3k
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Answer: A: Error running sam-dump
8.1 years ago by Renesh ★ 2.2k
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1
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2.3k
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Comment: C: For Basespace data download
8.1 years ago by Renesh ★ 2.2k
1
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1
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2.3k
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Answer: A: For Basespace data download
8.1 years ago by Renesh ★ 2.2k
1
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0
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2.1k
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Answer: A: How to show biological processes associated with a small list of genes?
9.1 years ago by Renesh ★ 2.2k
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0
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6.8k
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Comment: C: How to confirm forward primer matches each read without removing primer sequence
9.1 years ago by Renesh ★ 2.2k
1
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1
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3.0k
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Cufflink p-value using blind dispersion method
RNA-Seq
updated 2.4 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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0
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8.4k
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Comment: Comment: How can I BLAST each sequence in a FASTA-file against all the other sequences in
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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1
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8.4k
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Answer: Answer: How can I BLAST each sequence in a FASTA-file against all the other sequences in
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
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0
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Comment: C: GATK VariantRecalibrator error: Values for DP annotation not detected for ANY tr
9.7 years ago by Renesh ★ 2.2k
0
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0
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3.6k
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Comment: Comment: Unaligning BAM files
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
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1
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3.6k
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Comment: Comment: Unaligning BAM files
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
1
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1
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3.6k
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Comment: C: Unaligning BAM files
9.7 years ago by Renesh ★ 2.2k
1
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1
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3.1k
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Answer: A: SOAPdenovo: what is the input file of the second step (the command "contig") ?
9.7 years ago by Renesh ★ 2.2k
0
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0
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3.9k
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Comment: C: De novo genome assembly using Ion Proton data: which assembler do you recommend?
9.7 years ago by Renesh ★ 2.2k
1
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1
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3.9k
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Answer: Answer: De novo genome assembly using Ion Proton data: which assembler do you recommend?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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0
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2.7k
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Comment: C: Is it possible to use interleaved fastq data with SOAPdenovo?
9.7 years ago by Renesh ★ 2.2k
0
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1
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2.7k
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Comment: C: Is it possible to use interleaved fastq data with SOAPdenovo?
9.7 years ago by Renesh ★ 2.2k
0
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1
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2.7k
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Answer: Answer: Is it possible to use interleaved fastq data with SOAPdenovo?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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1
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3.2k
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Comment: Comment: How To Add Specific Word To First word in Fasta header
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
2
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1
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2.9k
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Answer: Answer: Is there a way to know sequences length when querying ENA programmatically?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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1
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4.0k
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Answer: A: Standard methods for filtering enriched GO terms based on similarity scores?
9.7 years ago by Renesh ★ 2.2k
0
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0
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3.9k
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Comment: C: Optimizing De Novo Transcriptome assemblies for non model organisms
9.7 years ago by Renesh ★ 2.2k
0
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1
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3.9k
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Comment: C: Optimizing De Novo Transcriptome assemblies for non model organisms
9.7 years ago by Renesh ★ 2.2k
0
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0
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3.9k
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Answer: A: Optimizing De Novo Transcriptome assemblies for non model organisms
9.7 years ago by Renesh ★ 2.2k
1
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2
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7.1k
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Answer: Answer: How to filter unique reads from sam file?
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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1
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6.9k
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Answer: A: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
9.7 years ago by Renesh ★ 2.2k
2
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1
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4.2k
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Answer: Answer: Reads and Read Segments in Alignment
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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0
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2.3k
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Answer: Answer: What are the shortcomings of the Conserved Domain Database (CDD)?
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
1
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1
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4.2k
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Answer: Answer: Reads and Read Segments in Alignment
updated 2.6 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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0
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1.8k
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Answer: A: Append gene annotation to cuffdiff output
9.8 years ago by Renesh ★ 2.2k
0
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0
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4.1k
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Comment: Comment: Cuffmerge drops gene_ids and transcript features?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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0
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3.7k
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Comment: Comment: Relative microRNA comparison from from TCGA data?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
reply
4.1k
views
Comment: Comment: Cuffmerge drops gene_ids and transcript features?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
2
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1
reply
3.7k
views
Answer: Answer: Relative microRNA comparison from from TCGA data?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
0
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1
reply
4.1k
views
Answer: Answer: Cuffmerge drops gene_ids and transcript features?
updated 2.6 years ago by 44k • written 9.8 years ago by ★ 2.2k
1
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0
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2.9k
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Answer: A: Finding simple sequence repeat (SSR) on differentially expressed RNA-seq reads
10.1 years ago by Renesh ★ 2.2k
3
votes
1
reply
7.9k
views
Answer: Answer: Best UPDATED tool for enrichment anlysis
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 2.2k
0
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0
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4.3k
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Comment: Comment: Prokka not running on Biolinux8
updated 3.6 years ago by 44k • written 10.1 years ago by ★ 2.2k
0
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0
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1.5k
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Answer: Answer: Number of possible statistical test can be used on the observation data.
updated 3.7 years ago by 44k • written 10.1 years ago by ★ 2.2k
214 results • Page 3 of 5
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