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2
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453
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Answer: Answer: Choosing an FC Threshold
9 months ago by Gordon Smyth ★ 7.8k
1
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1.9k
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Comment: Comment: Shrink logFC values after edgeR
9 months ago by Gordon Smyth ★ 7.8k
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1
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969
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
9 months ago by Gordon Smyth ★ 7.8k
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1
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969
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
9 months ago by Gordon Smyth ★ 7.8k
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840
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Comment: Comment: Differential express genes in imbalance groups
10 months ago by Gordon Smyth ★ 7.8k
3
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3
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840
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Answer: Answer: Differential express genes in imbalance groups
10 months ago by Gordon Smyth ★ 7.8k
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357
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Comment: Comment: Computing mid parent value for DE analysis
10 months ago by Gordon Smyth ★ 7.8k
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1.2k
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
10 months ago by Gordon Smyth ★ 7.8k
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1.6k
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Answer: Answer: MA graphs for EdgeR and Voom vary
10 months ago by Gordon Smyth ★ 7.8k
3
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1.9k
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Comment: Comment: Shrink logFC values after edgeR
10 months ago by Gordon Smyth ★ 7.8k
2
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945
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
10 months ago by Gordon Smyth ★ 7.8k
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1.4k
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
10 months ago by Gordon Smyth ★ 7.8k
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4.5k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
10 months ago by Gordon Smyth ★ 7.8k
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1
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1.4k
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
3 months ago by Gordon Smyth ★ 7.8k
6
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1
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682
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Answer: Answer: Bayesian Differential Expression
11 months ago by Gordon Smyth ★ 7.8k
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698
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Comment: Comment: filtering lowly expressed reads
11 months ago by Gordon Smyth ★ 7.8k
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412
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Comment: Comment: Design matrix after RUVg correction
11 months ago by Gordon Smyth ★ 7.8k
2
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3.6k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
11 months ago by Gordon Smyth ★ 7.8k
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1.3k
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Answer: Answer: EdgeR: upregulated with respect to what group?
11 months ago by Gordon Smyth ★ 7.8k
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1.6k
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Answer: Answer: Is there a program to average read counts from technical replicates?
11 months ago by Gordon Smyth ★ 7.8k
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1.1k
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
11 months ago by Gordon Smyth ★ 7.8k
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1.1k
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
11 months ago by Gordon Smyth ★ 7.8k
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0
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1.8k
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Answer: Answer: positive and negative Fold Change glmLRT test
11 months ago by Gordon Smyth ★ 7.8k
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0
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951
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
11 months ago by Gordon Smyth ★ 7.8k
2
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1
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1.9k
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Answer: Answer: Shrink logFC values after edgeR
11 months ago by Gordon Smyth ★ 7.8k
1
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1
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917
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
11 months ago by Gordon Smyth ★ 7.8k
3
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1
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917
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
11 months ago by Gordon Smyth ★ 7.8k
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0
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478
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
11 months ago by Gordon Smyth ★ 7.8k
1
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0
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429
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Comment: Comment: Gene expression of microarray data
11 months ago by Gordon Smyth ★ 7.8k
0
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1
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945
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Comment: Comment: Differential RNA editing using edgeR
12 months ago by Gordon Smyth ★ 7.8k
2
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1
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945
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Answer: Answer: Differential RNA editing using edgeR
12 months ago by Gordon Smyth ★ 7.8k
0
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1
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874
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Comment: Comment: how to start DEG analysis after featurecounts
12 months ago by Gordon Smyth ★ 7.8k
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0
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
8 months ago by Gordon Smyth ★ 7.8k
0
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1
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
12 months ago by Gordon Smyth ★ 7.8k
0
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0
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
12 months ago by Gordon Smyth ★ 7.8k
0
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1
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
12 months ago by Gordon Smyth ★ 7.8k
1
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0
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
13 months ago by Gordon Smyth ★ 7.8k
1
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1
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2.4k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
13 months ago by Gordon Smyth ★ 7.8k
1
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2
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2.4k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
13 months ago by Gordon Smyth ★ 7.8k
2
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0
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2.0k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
13 months ago by Gordon Smyth ★ 7.8k
0
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0
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751
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Comment: Comment: featureCounts error???
14 months ago by Gordon Smyth ★ 7.8k
3
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1
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978
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Answer: Answer: Microarray data analysis with and without contrast
14 months ago by Gordon Smyth ★ 7.8k
2
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0
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7.9k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
14 months ago by Gordon Smyth ★ 7.8k
1
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1
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7.9k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
14 months ago by Gordon Smyth ★ 7.8k
0
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1
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1.6k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
14 months ago by Gordon Smyth ★ 7.8k
0
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0
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1.6k
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Answer: Answer: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
14 months ago by Gordon Smyth ★ 7.8k
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1
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1.3k
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Comment: Comment: Use limma for correlation analysis of RNA-seqdata and continous trait
16 months ago by Gordon Smyth ★ 7.8k
1
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2
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1.3k
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Answer: Answer: Use limma for correlation analysis of RNA-seqdata and continous trait
16 months ago by Gordon Smyth ★ 7.8k
2
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0
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2.4k
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Answer: Answer: Extracting Residuals from Differential Expression Model
16 months ago by Gordon Smyth ★ 7.8k
1
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1
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816
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Answer: Answer: DGEList error in EdgeR - Warning: Error in $: $ operator is invalid for atomic v
17 months ago by Gordon Smyth ★ 7.8k
543 results • Page 2 of 11
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