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Comment: C: Can we predict/quantify transcription factor activation using gene expression da
7.4 years ago by James Ashmore ★ 3.5k
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1
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5.2k
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Comment: C: macs2 normalization on broadPeak
7.4 years ago by James Ashmore ★ 3.5k
2
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2
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5.2k
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Answer: A: macs2 normalization on broadPeak
7.4 years ago by James Ashmore ★ 3.5k
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0
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1.2k
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Comment: C: How to deal with several samples from one individuals in the expression level an
7.4 years ago by James Ashmore ★ 3.5k
2
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1
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2.7k
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Comment: C: Does read counts for ATAC-seq differential detection make sense?
7.4 years ago by James Ashmore ★ 3.5k
1
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1
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4.1k
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Comment: C: Calculate the fraction of genome that is feature X
7.4 years ago by James Ashmore ★ 3.5k
6
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3
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4.1k
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Answer: A: Calculate the fraction of genome that is feature X
7.4 years ago by James Ashmore ★ 3.5k
1
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0
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11k
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Comment: C: Best databases for Chip-Seq
7.4 years ago by James Ashmore ★ 3.5k
0
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0
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4.1k
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Comment: C: Bedtools intersect QTL animalgenome
7.4 years ago by James Ashmore ★ 3.5k
1
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0
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2.0k
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Answer: A: Add head to coverage output for many files
7.4 years ago by James Ashmore ★ 3.5k
0
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0
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9.4k
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Comment: C: Removing PCR duplicates - fastq or BAM?
7.4 years ago by James Ashmore ★ 3.5k
2
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1
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2.1k
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Comment: C: How to automatically find the right species name when there are typos, using Ent
7.4 years ago by James Ashmore ★ 3.5k
0
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1
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9.4k
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Comment: C: Removing PCR duplicates - fastq or BAM?
7.4 years ago by James Ashmore ★ 3.5k
0
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1
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2.3k
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Answer: A: Need to extract sequences from genome fasta (SeqIO object) into output file usin
7.4 years ago by James Ashmore ★ 3.5k
1
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0
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4.9k
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Answer: A: Duplicates in ATAC-seq data
7.4 years ago by James Ashmore ★ 3.5k
3
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1
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8.2k
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Comment: C: Need help : cut the fasta sequences from a specific region
7.4 years ago by James Ashmore ★ 3.5k
0
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1
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8.2k
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Comment: C: Need help : cut the fasta sequences from a specific region
7.4 years ago by James Ashmore ★ 3.5k
0
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0
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8.2k
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Comment: C: Need help : cut the fasta sequences from a specific region
7.4 years ago by James Ashmore ★ 3.5k
0
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0
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2.1k
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Comment: C: Any advanced and really structured course on Python language or My Sql or R or U
7.4 years ago by James Ashmore ★ 3.5k
0
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0
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8.2k
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Comment: C: Need help : cut the fasta sequences from a specific region
7.4 years ago by James Ashmore ★ 3.5k
1
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0
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3.1k
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Comment: C: Multiple group model matrix in rna-seq DE analysis
7.4 years ago by James Ashmore ★ 3.5k
1
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0
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2.3k
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Answer: A: retrieve Sequence by Gene name?
7.4 years ago by James Ashmore ★ 3.5k
1
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1
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2.6k
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Answer: A: Download SRA data via SRA Toolkit.
7.4 years ago by James Ashmore ★ 3.5k
2
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1
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4.9k
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Answer: A: Differential expression for two very different samples
7.4 years ago by James Ashmore ★ 3.5k
2
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2
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12k
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Answer: A: How to download metadata from the SRA?
7.4 years ago by James Ashmore ★ 3.5k
4
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1
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9.4k
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Answer: C: Getting average fragment length for single end reads
7.5 years ago by James Ashmore ★ 3.5k
2
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1
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8.2k
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Answer: A: SRX from SRR IDs
7.6 years ago by James Ashmore ★ 3.5k
0
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0
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13k
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Comment: C: Shifting reads for ATAC-seq alignments
7.6 years ago by James Ashmore ★ 3.5k
1
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0
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5.2k
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Comment: C: Appropriate statistical test for overlap analyses?
7.6 years ago by James Ashmore ★ 3.5k
1
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2
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4.0k
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Reads not assigned to features in featureCounts software
featurecounts subread
7.6 years ago by James Ashmore ★ 3.5k
0
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0
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4.0k
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Comment: C: Reads not assigned to features in featureCounts software
7.6 years ago by James Ashmore ★ 3.5k
1
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0
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7.5k
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Answer: A: Blacklisted regions for mm10
7.6 years ago by James Ashmore ★ 3.5k
0
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1
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2.6k
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Answer: A: Looking for wig base coverage file for hg19
7.6 years ago by James Ashmore ★ 3.5k
0
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0
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7.2k
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Comment: C: Speed up Picard MarkDuplicates or any better software?
7.6 years ago by James Ashmore ★ 3.5k
1
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1
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4.5k
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Comment: C: Calling peaks with macs2 if not all replicates have a corresponding input-file
7.6 years ago by James Ashmore ★ 3.5k
0
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1
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2.3k
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Comment: C: A code for splitting FASTA file, No output is written for the file
7.6 years ago by James Ashmore ★ 3.5k
2
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1
reply
13k
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Answer: A: MACS2 with multiple replicates
7.7 years ago by James Ashmore ★ 3.5k
0
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1
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2.3k
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Comment: C: Questions about LB field in SAM specification for PCR duplicate removal
7.7 years ago by James Ashmore ★ 3.5k
0
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2
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2.6k
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Answer: A: number of MAPQ=0 reads or alignments in BWA MEM output
7.7 years ago by James Ashmore ★ 3.5k
0
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4
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2.3k
views
Questions about LB field in SAM specification for PCR duplicate removal
sam markduplicates
7.7 years ago by James Ashmore ★ 3.5k
1
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0
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4.2k
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Answer: A: Trim FASTA header in multifasta file
7.7 years ago by James Ashmore ★ 3.5k
0
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1
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7.3k
views
Comment: C: MACS2 produces different results using BAMPE and BEDPE
7.7 years ago by James Ashmore ★ 3.5k
1
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1
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7.3k
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Comment: C: MACS2 produces different results using BAMPE and BEDPE
7.7 years ago by James Ashmore ★ 3.5k
0
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0
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1.6k
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Comment: C: Divide each fasta sequence into fragments of 200 nucleotides
7.7 years ago by James Ashmore ★ 3.5k
2
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1
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1.6k
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Answer: A: Divide each fasta sequence into fragments of 200 nucleotides
7.7 years ago by James Ashmore ★ 3.5k
1
vote
1
reply
3.2k
views
Comment: C: sam-dump output is empty
7.7 years ago by James Ashmore ★ 3.5k
2
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2
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8.4k
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Answer: A: FastQC in R
7.7 years ago by James Ashmore ★ 3.5k
3
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1
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2.4k
views
Comment: C: Screen shots of text (please don't)!
7.7 years ago by James Ashmore ★ 3.5k
0
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0
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6.7k
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Comment: C: Removal of repeat and blacklist regions from ChIP-seq data
7.7 years ago by James Ashmore ★ 3.5k
0
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2
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6.7k
views
Comment: C: Removal of repeat and blacklist regions from ChIP-seq data
7.7 years ago by James Ashmore ★ 3.5k
290 results • Page 3 of 6
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