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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.5 years ago by Phil Ewels ★ 1.4k
1
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1
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2.3k
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Comment: Comment: mapped reads (m aligned) is higher for a subset sample?
3.5 years ago by Phil Ewels ★ 1.4k
3
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0
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3.0k
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Answer: Answer: Flagstats and multiqc
3.5 years ago by Phil Ewels ★ 1.4k
2
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1
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2.3k
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Answer: Answer: Missing some output files for MultiQC
3.5 years ago by Phil Ewels ★ 1.4k
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2.3k
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Comment: Comment: Missing some output files for MultiQC
3.5 years ago by Phil Ewels ★ 1.4k
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8.9k
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Answer: Answer: cannot import name 'gcd' from 'fractions'
3.5 years ago by Phil Ewels ★ 1.4k
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4.5k
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Answer: Answer: Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
3.6 years ago by Phil Ewels ★ 1.4k
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0
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4.5k
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Comment: Comment: Multiqc raises the "cannot import name 'gcd' from 'fractions'" error
3.6 years ago by Phil Ewels ★ 1.4k
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4.5k
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Comment: Comment: How to interpret multiqc report
3.6 years ago by Phil Ewels ★ 1.4k
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17k
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Comment: Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
3.7 years ago by Phil Ewels ★ 1.4k
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2
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17k
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Comment: Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
3.7 years ago by Phil Ewels ★ 1.4k
70
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25
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17k
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12 follow
Tool: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq SRA
updated 13 months ago by 147k • written 5.7 years ago by ★ 1.4k
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1
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.2 years ago by Phil Ewels ★ 1.4k
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0
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.3 years ago by Phil Ewels ★ 1.4k
1
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1
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
4.3 years ago by Phil Ewels ★ 1.4k
0
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0
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2.2k
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Comment: C: MultiQC extra_fn_clean_exts for specific module
4.5 years ago by Phil Ewels ★ 1.4k
0
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0
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.0 years ago by Phil Ewels ★ 1.4k
0
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1
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.0 years ago by Phil Ewels ★ 1.4k
1
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0
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11k
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Answer: A: Installing MultiQC on Ubuntu
5.1 years ago by Phil Ewels ★ 1.4k
0
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0
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1.5k
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Answer: A: ask for a CWL script to perform FASTQC to get quality control files, then use th
5.1 years ago by Phil Ewels ★ 1.4k
1
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1
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17k
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Comment: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
5.7 years ago by Phil Ewels ★ 1.4k
3
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1
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2.2k
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Answer: A: MultiQC extra_fn_clean_exts for specific module
5.7 years ago by Phil Ewels ★ 1.4k
1
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0
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8.7k
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Answer: A: How do you use MultiQC on FastQC files taken from SRA files?
6.0 years ago by Phil Ewels ★ 1.4k
1
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0
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3.3k
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Answer: A: Difference in duplicate number with samtools flagstat and multiqc/fastqc
6.0 years ago by Phil Ewels ★ 1.4k
3
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0
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5.6k
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Comment: C: How to extract mapping features of multiple samples in one output?
6.0 years ago by Phil Ewels ★ 1.4k
4
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1
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4.0k
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Answer: A: Converting FASTQC Reports to PDF
6.0 years ago by Phil Ewels ★ 1.4k
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0
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2.4k
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Job: System developer at NGI Stockholm Sequencing Facility, SciLifeLab Sweden
automation developer sysadmin facility
updated 18 months ago by 44k • written 7.0 years ago by ★ 1.4k
0
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3.8k
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Comment: C: How to calculate the percent of methylated cytosines.
7.2 years ago by Phil Ewels ★ 1.4k
0
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1
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3.8k
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Comment: C: How to calculate the percent of methylated cytosines.
7.2 years ago by Phil Ewels ★ 1.4k
1
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2
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3.8k
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Answer: A: How to calculate the percent of methylated cytosines.
7.2 years ago by Phil Ewels ★ 1.4k
1
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0
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
1
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1
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
1
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0
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
1
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1
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
0
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0
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2.2k
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Answer: A: Are all antisense transcripts from polyA enriched library RNA-seq polyadenylated
7.2 years ago by Phil Ewels ★ 1.4k
1
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0
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
1
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2
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7.6k
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Comment: C: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
2
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1
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7.6k
views
Answer: A: Too low mapping percentage using HISAT2 on human reference genome.
7.2 years ago by Phil Ewels ★ 1.4k
1
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0
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2.1k
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Answer: A: multiqc : sum up several _Log.final.out into one
7.2 years ago by Phil Ewels ★ 1.4k
0
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0
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2.7k
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Comment: C: Bismark on sample with 2 genomes
7.6 years ago by Phil Ewels ★ 1.4k
2
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0
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2.7k
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Answer: A: Bismark on sample with 2 genomes
7.6 years ago by Phil Ewels ★ 1.4k
0
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0
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6.8k
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Comment: C: Running multiQC on more than one file Log.final.out from STAR
8.0 years ago by Phil Ewels ★ 1.4k
2
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0
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6.8k
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Answer: A: Running multiQC on more than one file Log.final.out from STAR
8.0 years ago by Phil Ewels ★ 1.4k
1
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0
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18k
views
Answer: Answer: Workflow management software for pipeline development in NGS
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 1.4k
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