Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
2.2k
views
Answer: Answer: Poly-A trimming for WGBS
13 months ago by Brian Bushnell 20k
0
votes
1
reply
718
views
Comment: Comment: Query regarding callsets used as known sites in Variant Calling
13 months ago by Brian Bushnell 20k
1
vote
0
replies
923
views
Comment: Comment: salmon for gene expression quantification
13 months ago by Brian Bushnell 20k
0
votes
0
replies
1.1k
views
Comment: Comment: Quality filtering prior to pseudoalignment
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.0k
views
Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
13 months ago by Brian Bushnell 20k
0
votes
0
replies
616
views
Answer: Answer: how to create a consensus sequence from different assemblies
13 months ago by Brian Bushnell 20k
2
votes
0
replies
2.0k
views
Comment: Comment: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
13 months ago by Brian Bushnell 20k
2
votes
2
replies
2.0k
views
Answer: Answer: Uncertainty of how to proceed with Metagenomic Analysis of WGS data
13 months ago by Brian Bushnell 20k
1
vote
1
reply
900
views
Answer: Answer: Conceptual question about open reading frames
13 months ago by Brian Bushnell 20k
1
vote
0
replies
613
views
Answer: Answer: Do threads matter for host DNA removal with bbmap?
13 months ago by Brian Bushnell 20k
0
votes
0
replies
1.1k
views
Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
13 months ago by Brian Bushnell 20k
0
votes
0
replies
1.2k
views
Answer: Answer: Detect contaminating organism
13 months ago by Brian Bushnell 20k
2
votes
2
replies
2.5k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
13 months ago by Brian Bushnell 20k
1
vote
0
replies
2.0k
views
Comment: Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
13 months ago by Brian Bushnell 20k
2
votes
1
reply
1.2k
views
Answer: Answer: RNA-Seq with DNA contamination, any way to salvage the data?
13 months ago by Brian Bushnell 20k
1
vote
2
replies
1.1k
views
Comment: Comment: Can clumpify.sh be used in a streaming fashion downstream of bcl-convert
13 months ago by Brian Bushnell 20k
1
vote
0
replies
1.3k
views
Comment: Comment: Command line or python RNA-seq read simulator
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.5k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
13 months ago by Brian Bushnell 20k
2
votes
1
reply
8.3k
views
Answer: Answer: Randomize Read Order In Multigbp Fastq File?
13 months ago by Brian Bushnell 20k
0
votes
1
reply
868
views
Comment: Comment: trimming primers using iVar
13 months ago by Brian Bushnell 20k
1
vote
0
replies
1.1k
views
Comment: Comment: Best way to use k-mers as a predictor in my neural network
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.3k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.0k
views
Comment: Comment: Tools for reference-guided de novo assembly of bacterial genome
13 months ago by Brian Bushnell 20k
1
vote
2
replies
2.5k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.5k
views
Comment: Comment: Building reference dbSNP file for citrus sinensis using 80 WGS samples
13 months ago by Brian Bushnell 20k
3
votes
1
reply
2.0k
views
Answer: Answer: Tools for reference-guided de novo assembly of bacterial genome
13 months ago by Brian Bushnell 20k
3
votes
1
reply
855
views
Answer: Answer: Exception in thread "main" java.lang.RuntimeException: Sequence and quality leng
13 months ago by Brian Bushnell 20k
1
vote
1
reply
2.3k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
13 months ago by Brian Bushnell 20k
1
vote
0
replies
2.3k
views
Comment: Comment: What is the best way to compute genetic distances between FASTQ files?
13 months ago by Brian Bushnell 20k
3
votes
1
reply
2.3k
views
Answer: Answer: What is the best way to compute genetic distances between FASTQ files?
13 months ago by Brian Bushnell 20k
0
votes
0
replies
1.3k
views
Comment: Comment: Aligner with statistics included?
13 months ago by Brian Bushnell 20k
0
votes
0
replies
703
views
Comment: Comment: Complexity curve for PE fastq files
13 months ago by Brian Bushnell 20k
1
vote
0
replies
811
views
Answer: Answer: Small RNA sequencing using Illumina 2 channel SBS: how to deal with Gs?
13 months ago by Brian Bushnell 20k
1
vote
1
reply
703
views
Answer: Answer: Complexity curve for PE fastq files
13 months ago by Brian Bushnell 20k
3
votes
1
reply
1.6k
views
Comment: Comment: NGS one-liner to call variants
13 months ago by Brian Bushnell 20k
3
votes
1
reply
1.1k
views
Answer: Answer: What are unbinned contigs ?
13 months ago by Brian Bushnell 20k
1
vote
0
replies
1.2k
views
Comment: Comment: BBtools callvariants.sh
14 months ago by Brian Bushnell 20k
1
vote
2
replies
1.2k
views
Answer: Answer: BBtools callvariants.sh
14 months ago by Brian Bushnell 20k
0
votes
0
replies
2.5k
views
Answer: Answer: How to discard alignments from SAM/BAM file that have mismatches
14 months ago by Brian Bushnell 20k
0
votes
0
replies
2.1k
views
Comment: Comment: Simulate reads for positions in a vcf file
14 months ago by Brian Bushnell 20k
1
vote
0
replies
1.2k
views
Answer: Answer: Repeat detection/masking in bacteria
14 months ago by Brian Bushnell 20k
0
votes
0
replies
2.6k
views
Comment: Comment: GATK memory error with Java
14 months ago by Brian Bushnell 20k
0
votes
0
replies
1.0k
views
Answer: Answer: Deduplication
14 months ago by Brian Bushnell 20k
0
votes
0
replies
2.6k
views
Answer: Answer: Aligning very short sequences using bowtie2, I need fine control over how many m
14 months ago by Brian Bushnell 20k
1
vote
0
replies
1.3k
views
Answer: Answer: Mitochondrial contig identification in fungal genome assemblies
14 months ago by Brian Bushnell 20k
0
votes
0
replies
2.1k
views
Comment: Comment: Check Strandedness
14 months ago by Brian Bushnell 20k
0
votes
0
replies
854
views
Comment: Comment: Allele numbers and frequencies in X and Y chr?
14 months ago by Brian Bushnell 20k
1
vote
1
reply
922
views
Comment: Comment: Viral positive and negative strand with paired sequencing and bowtie
14 months ago by Brian Bushnell 20k
0
votes
0
replies
534
views
Answer: Answer: Partition reads in BAM file by MAG
14 months ago by Brian Bushnell 20k
1
vote
0
replies
2.2k
views
Answer: Answer: Can BWA (mem) detect longer deletions?
14 months ago by Brian Bushnell 20k
2,080 results • Page 3 of 42
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6