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1
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633
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Comment: Comment: Reducing BWA mem seed length when a genome is highly heterozygous?
14 months ago by Brian Bushnell 20k
0
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0
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1.2k
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Comment: Comment: Average Coverage after Assembly (Spades)
14 months ago by Brian Bushnell 20k
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0
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1.2k
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Answer: Answer: Average Coverage after Assembly (Spades)
14 months ago by Brian Bushnell 20k
1
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1
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904
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Answer: Answer: Detect STRs in illumina library
14 months ago by Brian Bushnell 20k
3
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1
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2.6k
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Answer: Answer: What is the correct procedure to generate a consensus bacterial sequence?
14 months ago by Brian Bushnell 20k
0
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0
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771
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Answer: Answer: Lower alignment rate when using collapsed reads
14 months ago by Brian Bushnell 20k
0
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0
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1.2k
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Answer: Answer: Recommendations for extending contigs from denovo assembly to identify SV insert
14 months ago by Brian Bushnell 20k
1
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1
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1.3k
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Comment: Comment: vcf.gz to vcf
14 months ago by Brian Bushnell 20k
2
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1
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5.3k
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Answer: Answer: Convert amino acid sequences into nucleotide sequences
14 months ago by Brian Bushnell 20k
0
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1
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953
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Answer: Answer: Viral positive and negative strand with paired sequencing and bowtie
14 months ago by Brian Bushnell 20k
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0
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837
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Answer: Answer: How to choose the best tool for variant trio analysis
14 months ago by Brian Bushnell 20k
2
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2
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1.4k
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Answer: Answer: Aligner with statistics included?
updated 14 months ago by 44k • written 14 months ago by 20k
2
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1
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2.5k
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Answer: Answer: Building reference dbSNP file for citrus sinensis using 80 WGS samples
14 months ago by Brian Bushnell 20k
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0
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3.4k
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Answer: Answer: Which alignment for whole bacterial genomes for phylogenetic tree?
14 months ago by Brian Bushnell 20k
2
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0
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994
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Answer: Answer: Estimating Index Hopping
14 months ago by Brian Bushnell 20k
0
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0
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1.2k
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Comment: Comment: checkstrand tool (from BBMap suite) question
14 months ago by Brian Bushnell 20k
0
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1
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1.2k
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Comment: Comment: checkstrand tool (from BBMap suite) question
14 months ago by Brian Bushnell 20k
0
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0
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1.2k
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Comment: Comment: checkstrand tool (from BBMap suite) question
14 months ago by Brian Bushnell 20k
1
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1
reply
1.2k
views
Answer: Answer: checkstrand tool (from BBMap suite) question
updated 14 months ago by 148k • written 14 months ago by 20k
1
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3
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1.2k
views
Answer: Answer: checkstrand tool (from BBMap suite) question
updated 14 months ago by 148k • written 14 months ago by 20k
0
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0
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1.5k
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Comment: Comment: BBTools 39.03 releaed!
14 months ago by Brian Bushnell 20k
0
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0
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1.5k
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Comment: Comment: BBTools 39.03 releaed!
15 months ago by Brian Bushnell 20k
12
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4
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1.5k
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Tool: BBTools 39.03 released!
BBTools BBMap
14 months ago by Brian Bushnell 20k
0
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0
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15k
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Comment: Comment: BBSketch - A Tool for Rapid Sequence Comparison
2.3 years ago by Brian Bushnell 20k
26
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22
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15k
views
10 follow
Tool: BBSketch - A Tool for Rapid Sequence Comparison
minhash sketch bbmap blast
updated 19 months ago by 44k • written 7.9 years ago by 20k
3
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1
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1.8k
views
Answer: Answer: Help with clumpify.sh
2.4 years ago by Brian Bushnell 20k
2
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1
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2.4k
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Comment: Comment: BBSplit index creation seems to use a subset of the references provided
2.5 years ago by Brian Bushnell 20k
2
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1
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2.4k
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Answer: Answer: BBSplit index creation seems to use a subset of the references provided
2.5 years ago by Brian Bushnell 20k
0
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1
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1.2k
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Comment: Comment: Clumpify on multiple files
3.0 years ago by Brian Bushnell 20k
3
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1
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2.6k
views
Answer: C: BBMap tool error - randomreads.sh
4.1 years ago by Brian Bushnell 20k
79
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86
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35k
views
20 follow
Tool: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates.
clumpify storage bbmap pigz compression
updated 18 months ago by 44k • written 8.1 years ago by 20k
0
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0
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2.5k
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Comment: C: Can Tophat2 Align a Book?
updated 4.6 years ago by 44k • written 9.4 years ago by 20k
0
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0
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35k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
4.6 years ago by Brian Bushnell 20k
4
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1
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2.5k
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Answer: A: Current challenges in SARS-CoV-2 analysis?
4.7 years ago by Brian Bushnell 20k
2
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2
replies
9.0k
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Answer: Answer: Calculate percentage of bases covered less than nX in targeted sequencing experi
updated 2.8 years ago by 44k • written 10.0 years ago by 20k
0
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1
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15k
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Comment: C: BBSketch - A Tool for Rapid Sequence Comparison
updated 5.0 years ago by 148k • written 5.0 years ago by 20k
0
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1
reply
3.1k
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Comment: C: BBMap NullPointer during initialization
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
2
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1
reply
15k
views
Comment: C: How to identify 16s sequences from binning data(contigs)?
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
1
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0
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4.6k
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Comment: C: kmer alignment with mismatch
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
2
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1
reply
13k
views
Comment: C: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
8
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0
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24k
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Comment: C: Splice aware aligner - what does it mean?
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
1
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1
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1.9k
views
Comment: C: Remove duplicates in two databases
updated 5.0 years ago by 44k • written 8.9 years ago by 20k
8
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0
replies
21k
views
Answer: A: Extract sequence with header from a fasta file with specific ID given in another
updated 5.0 years ago by 44k • written 10.0 years ago by 20k
1
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1
reply
2.8k
views
Comment: C: Identify sequencing adaptor contamination programatically
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
0
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0
replies
3.5k
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Answer: A: Extract only sequences that have N nucleotides
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
1
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1
reply
12k
views
Comment: C: How detrimental are duplicate reads in RNAseq experiments?
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
1
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1
reply
5.2k
views
Comment: C: samtools merge extremely slow
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
1
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1
reply
5.2k
views
Answer: A: samtools merge extremely slow
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
1
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2
replies
2.8k
views
Comment: C: Identify sequencing adaptor contamination programatically
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
1
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0
replies
1.6k
views
Answer: A: Fast imputation of variants for 4x WGS?
updated 5.0 years ago by 44k • written 9.0 years ago by 20k
2,080 results • Page 4 of 42
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