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Comment: Comment: Bowtie2 Alignment summary
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.0k
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0
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2.4k
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Comment: C: What is nucleotide substitution rate (of aligned sequences)?
9.2 years ago by thackl ★ 3.0k
1
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2.4k
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Answer: Answer: What is nucleotide substitution rate (of aligned sequences)?
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.0k
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1
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13k
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Answer: A: Bowtie2 Alignment summary
9.2 years ago by thackl ★ 3.0k
1
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1
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2.5k
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Answer: A: What Quality Control software should i use?
9.2 years ago by thackl ★ 3.0k
0
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0
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9.8k
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Comment: C: How do I compute the effective genome size?
9.2 years ago by thackl ★ 3.0k
3
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2
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9.8k
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Answer: A: How do I compute the effective genome size?
9.2 years ago by thackl ★ 3.0k
0
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0
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3.0k
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Comment: Comment: error when using sickle for quality trimming
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 3.0k
0
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1
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9.8k
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Comment: C: How to generate contigs from bam alignment
9.3 years ago by thackl ★ 3.0k
1
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1
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9.8k
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Comment: C: How to generate contigs from bam alignment
9.3 years ago by thackl ★ 3.0k
2
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3
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9.8k
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Answer: A: How to generate contigs from bam alignment
9.3 years ago by thackl ★ 3.0k
0
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2
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9.8k
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Comment: Comment: How to generate contigs from bam alignment
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 3.0k
1
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0
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16k
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Answer: A: How Does Assembled Contigs Get Mapped To A Chromosome?
9.3 years ago by thackl ★ 3.0k
0
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1
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9.8k
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Comment: Comment: How to generate contigs from bam alignment
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 3.0k
1
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1
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9.8k
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Answer: Answer: How to generate contigs from bam alignment
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 3.0k
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0
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5.3k
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Answer: Answer: How To Adjust Bwa Mem To Allow For Longer Gaps In Contig Alignment
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
0
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0
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3.4k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.3 years ago by thackl ★ 3.0k
0
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1
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3.4k
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Comment: C: What does it mean that: 100% of my alignment are discordant?
9.3 years ago by thackl ★ 3.0k
0
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1
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3.4k
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Comment: Comment: What does it mean that: 100% of my alignment are discordant?
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
0
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0
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9.0k
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Comment: C: Randomize order of sequences in a fasta file
9.3 years ago by thackl ★ 3.0k
0
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1
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9.0k
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Comment: C: Randomize order of sequences in a fasta file
9.3 years ago by thackl ★ 3.0k
2
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1
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9.0k
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Answer: Answer: Randomize order of sequences in a fasta file
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
0
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1
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3.2k
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Answer: A: unalign bam and convert to fastq
9.3 years ago by thackl ★ 3.0k
0
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0
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5.1k
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Comment: C: Blastn doesn't allow certain gap penalties?
9.3 years ago by thackl ★ 3.0k
0
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1
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9.3k
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Comment: C: Jellyfish -C option explanation
9.3 years ago by thackl ★ 3.0k
1
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1
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9.3k
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Comment: Comment: Jellyfish -C option explanation
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
1
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1
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9.3k
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Comment: Comment: Jellyfish -C option explanation
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
1
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1
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2.4k
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Comment: C: Transposons and Pacbio
9.3 years ago by thackl ★ 3.0k
3
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1
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3.9k
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Answer: Answer: Perl : String comparison problem
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
0
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1
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3.9k
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Comment: Comment: Perl : String comparison problem
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
1
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1
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3.9k
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Comment: Comment: Perl : String comparison problem
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
0
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0
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2.6k
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Comment: C: Question about SAMTOOLS command
9.3 years ago by thackl ★ 3.0k
1
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1
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2.6k
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Comment: Comment: Question about SAMTOOLS command
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 3.0k
2
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0
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2.8k
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Comment: C: Number of Blast hits for multiple sequence fasta
9.3 years ago by thackl ★ 3.0k
0
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1
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3.3k
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Comment: C: Assemble short reads based on k-mers
9.4 years ago by thackl ★ 3.0k
0
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1
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3.3k
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Comment: C: Assemble short reads based on k-mers
9.4 years ago by thackl ★ 3.0k
0
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1
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3.3k
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Comment: C: Assemble short reads based on k-mers
9.4 years ago by thackl ★ 3.0k
0
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1
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3.3k
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Answer: A: Assemble short reads based on k-mers
9.4 years ago by thackl ★ 3.0k
0
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1
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3.7k
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Comment: C: bowtie options for exact match with reference short sequence
9.4 years ago by thackl ★ 3.0k
0
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1
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3.5k
views
Comment: Comment: Mapping shorts reads using Bowtie
updated 2.0 years ago by 44k • written 9.4 years ago by ★ 3.0k
0
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1
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3.5k
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Comment: Comment: Mapping shorts reads using Bowtie
updated 2.0 years ago by 44k • written 9.4 years ago by ★ 3.0k
2
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0
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3.2k
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Answer: Answer: Cases where indexing is efficient for read retrieval
updated 2.0 years ago by 44k • written 9.4 years ago by ★ 3.0k
1
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0
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7.3k
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Comment: Comment: How to align DNA reads against a database of protein references
updated 24 months ago by 44k • written 9.4 years ago by ★ 3.0k
3
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1
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4.5k
views
Answer: A: perl count fasta sequences
9.4 years ago by thackl ★ 3.0k
2
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1
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3.8k
views
Answer: A: Maximum allowed (mismatches) SNPs/INDELs in one read in Bowtie2 alignment
9.4 years ago by thackl ★ 3.0k
0
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1
reply
7.3k
views
Answer: A: How to align DNA reads against a database of protein references
9.4 years ago by thackl ★ 3.0k
0
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0
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2.6k
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Comment: C: Which Flash output file do you use in Soap denovo assembly
9.4 years ago by thackl ★ 3.0k
1
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1
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2.6k
views
Answer: A: Which Flash output file do you use in Soap denovo assembly
9.4 years ago by thackl ★ 3.0k
4
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0
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4.6k
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Answer: Answer: fastq to fasta perl
updated 2.8 years ago by 44k • written 9.4 years ago by ★ 3.0k
0
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0
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6.0k
views
Answer: A: view of a circular viral genome and its annotation
9.4 years ago by thackl ★ 3.0k
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