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1.7k
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Comment: C: align two long sequences using Muscle but found gaps only
8.7 years ago by Pei ▴ 220
0
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3
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1.7k
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align two long sequences using Muscle but found gaps only
alignment
8.7 years ago by Pei ▴ 220
0
votes
1
reply
1.7k
views
Should I remove scaffold when perform tophat and cufflinks ?
rna-seq
updated 8.7 years ago by 104k • written 8.7 years ago by ▴ 220
0
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0
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1.9k
views
Comment: Comment: which genome sequence fasta file should be used for builindg bowtie2 index ?
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 220
3
votes
3
replies
1.9k
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which genome sequence fasta file should be used for builindg bowtie2 index ?
RNA-Seq
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 220
0
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1
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2.6k
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Comment: C: low mapping rate when using SRA RNA-seq data
8.8 years ago by Pei ▴ 220
0
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3
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2.6k
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low mapping rate when using SRA RNA-seq data
RNA-Seq
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 220
0
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0
replies
3.3k
views
Comment: C: How to examine/validate my result of read-count from HTseq-count
9.0 years ago by Pei ▴ 220
1
vote
2
replies
3.3k
views
How to examine/validate my result of read-count from HTseq-count
RNA-Seq
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 220
1
vote
2
replies
2.8k
views
How to annotate a sequence with its genomic coordinates ?
RNA-sequence coordinates
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 220
0
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1
reply
1.6k
views
distribution of read-count per gene for results by HTSeq-count
RNA-Seq
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 220
0
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0
replies
2.5k
views
Comment: C: when using htseq-count, should I only count read-pairs whose two mates were both
9.0 years ago by Pei ▴ 220
0
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2
replies
2.5k
views
when using htseq-count, should I only count read-pairs whose two mates were both reported ?
RNA-Seq
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 220
0
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0
replies
1.6k
views
Comment: C: samtools view run into "uninterruptible sleep" status
9.0 years ago by Pei ▴ 220
2
votes
2
replies
1.6k
views
samtools view run into "uninterruptible sleep" status
linux
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 220
1
vote
0
replies
1.8k
views
miRDeep2 generated EMPTY signature.arf
miRDeep2
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 220
0
votes
1
reply
2.7k
views
what was represented by preprocessed RNAseq data provided by ucsc cancer genome browser
ucsc cancer genome browser
updated 9.6 years ago by 5.2k • written 9.6 years ago by ▴ 220
2
votes
1
reply
3.2k
views
what is the difference between reference genome sequence from UCSC and ensembl ?
reference-genome
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 220
1
vote
3
replies
3.0k
views
running tophat+cufflinks but result in 0 FPKMs
tophat FPKM cufflinks
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
1
vote
0
replies
3.0k
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Answer: Answer: running tophat+cufflinks but result in 0 FPKMs
updated 2.7 years ago by 44k • written 9.8 years ago by ▴ 220
0
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1
reply
6.5k
views
Comment: Comment: what should be the expected result of cuffmerge?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 220
0
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1
reply
6.5k
views
Comment: Comment: what should be the expected result of cuffmerge?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 220
0
votes
1
reply
6.5k
views
Comment: Comment: what should be the expected result of cuffmerge?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 220
5
votes
9
replies
6.5k
views
what should be the expected result of cuffmerge?
cuffmerge
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 220
0
votes
1
reply
6.5k
views
Comment: Comment: what should be the expected result of cuffmerge?
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 220
1
vote
0
replies
1.8k
views
Answer: Answer: chained blastz alignments
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
1
vote
1
reply
1.8k
views
chained blastz alignments
chained-alignments blastz
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
0
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2
replies
3.5k
views
Comment: Comment: from mean per-base read coverage to RPKM using the Brawand data
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
0
votes
6
replies
3.5k
views
from mean per-base read coverage to RPKM using the Brawand data
mean per-base read coverage
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
1
vote
0
replies
2.7k
views
how to convert the UCSC alignment chain file to read-able sequence file
pairwise-genomic-alignment
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
0
votes
0
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3.3k
views
Comment: Comment: how to annotate a genomic internval with its gene ID, sequence, seq-type
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 220
4
votes
9
replies
3.3k
views
how to annotate a genomic internval with its gene ID, sequence, seq-type
genomic-range annotation
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 220
0
votes
1
reply
3.3k
views
Comment: Comment: how to annotate a genomic internval with its gene ID, sequence, seq-type
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 220
0
votes
0
replies
3.3k
views
Comment: C: how to annotate a genomic internval with its gene ID, sequence, seq-type
10.0 years ago by Pei ▴ 220
0
votes
1
reply
3.3k
views
Comment: Comment: how to annotate a genomic internval with its gene ID, sequence, seq-type
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 220
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