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Comment: Comment: Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
3.5 years ago by qwzhang0601 ▴ 80
1
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Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
TCGA RNAseq
updated 3.5 years ago by 147k • written 3.5 years ago by ▴ 80
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1.2k
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Download raw RNA-seq data from TCGA
TCGA RNA-seq
3.5 years ago by qwzhang0601 ▴ 80
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0
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1.2k
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Comment: Comment: Download raw RNA-seq data from TCGA
3.5 years ago by qwzhang0601 ▴ 80
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0
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995
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Comment: C: Remove duplicate reads for bisulfite sequencing reads
3.8 years ago by qwzhang0601 ▴ 80
1
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2
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995
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Remove duplicate reads for bisulfite sequencing reads
DNA methylation remove duplicates
updated 3.8 years ago by 147k • written 3.8 years ago by ▴ 80
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0
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987
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Comment: C: TCGA raw RNA-Seq data
4.1 years ago by qwzhang0601 ▴ 80
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2
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987
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TCGA raw RNA-Seq data
RNA-Seq TCGA
updated 4.1 years ago by 85k • written 4.1 years ago by ▴ 80
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2
replies
644
views
merge file according to IDs
sequencing
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 80
0
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2
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788
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sum counts in regions in bed format
sequencing
4.1 years ago by qwzhang0601 ▴ 80
1
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1
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1.3k
views
align reads to regions with similar sequences
alignment
updated 4.2 years ago by 20 • written 6.6 years ago by ▴ 80
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0
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643
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RNA-Seq database across rodents
RNA-Seq gene expression
4.4 years ago by qwzhang0601 ▴ 80
10
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8
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8.2k
views
6 follow
Prepare gene families for CAFE
gene family CAFE
updated 5.0 years ago by ▴ 30 • written 7.8 years ago by ▴ 80
0
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2
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1.8k
views
alignment with phylogenetic tree
multiple-sequence-alignment phylogenetic-tree
updated 18 months ago by 44k • written 5.3 years ago by ▴ 80
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0
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1.8k
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Answer: A: alignment with phylogenetic tree
5.3 years ago by qwzhang0601 ▴ 80
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0
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1.6k
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Comment: C: obstain 100-way alignment of 100 species for a certain gene
5.3 years ago by qwzhang0601 ▴ 80
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0
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1.6k
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Comment: C: obstain 100-way alignment of 100 species for a certain gene
5.3 years ago by qwzhang0601 ▴ 80
3
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4
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1.6k
views
obstain 100-way alignment of 100 species for a certain gene
multiple-sequence-alignment 100-way-alignment
updated 18 months ago by 44k • written 5.3 years ago by ▴ 80
0
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0
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1.7k
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Comment: C: Validate PCR DNA primers against whole de novel genome
5.7 years ago by qwzhang0601 ▴ 80
0
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1
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1.7k
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Comment: C: Validate PCR DNA primers against whole de novel genome
5.7 years ago by qwzhang0601 ▴ 80
1
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4
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1.7k
views
Validate PCR DNA primers against whole de novel genome
primers in sillico
updated 5.7 years ago by ★ 1.9k • written 5.7 years ago by ▴ 80
12
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5
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9.9k
views
Repeatmasker, Can't locate Text/Soundex.pm
repeatMasker
updated 5.8 years ago by ▴ 80 • written 7.3 years ago by ▴ 80
0
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0
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1.1k
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Design paralog-specific primer for RT-PCR on de novel genome
qRT-PCR Primer
5.8 years ago by qwzhang0601 ▴ 80
1
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5
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2.4k
views
compare and merge VCF files
VCF genotype
written 6.0 years ago by ▴ 80
0
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0
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2.4k
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Comment: C: compare and merge VCF files
6.0 years ago by qwzhang0601 ▴ 80
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0
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2.4k
views
Comment: C: compare and merge VCF files
6.0 years ago by qwzhang0601 ▴ 80
0
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0
replies
1.6k
views
Compare gene expression in two species
RNA-Seq
6.1 years ago by qwzhang0601 ▴ 80
0
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1
reply
2.9k
views
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeatMasker repeats
updated 6.3 years ago by 8.3k • written 7.3 years ago by ▴ 80
0
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0
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1.2k
views
is there a tool to visualize and compare gene structure of orthologs/paralogs?
visualization ortholog paralog
6.4 years ago by qwzhang0601 ▴ 80
0
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0
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2.8k
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Comment: C: read counts for RNA-seq analysis of repeat elements
6.7 years ago by qwzhang0601 ▴ 80
0
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3
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2.8k
views
read counts for RNA-seq analysis of repeat elements
RNA-Seq Repeats
6.7 years ago by qwzhang0601 ▴ 80
0
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0
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5.9k
views
Comment: C: BUSCOs running time
6.8 years ago by qwzhang0601 ▴ 80
0
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2
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4.1k
views
install genewise (wise2.4.1) on linux
genewise
updated 6.8 years ago by ★ 2.9k • written 6.8 years ago by ▴ 80
0
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1
reply
2.3k
views
find pseudogenes for a new genome annotation
pseudogenes
7.0 years ago by qwzhang0601 ▴ 80
0
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3
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2.3k
views
choose the results using different parameters for CAFE3.0 (gene family expansion analysis)
CAFE gene family expansion gene family contraction
updated 7.0 years ago by ▴ 150 • written 7.1 years ago by ▴ 80
0
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0
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2.3k
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Comment: C: choose the results using different parameters for CAFE3.0 (gene family expansion
7.1 years ago by qwzhang0601 ▴ 80
0
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0
replies
1.6k
views
From phylogenetic tree to a time tree
RAxML
7.1 years ago by qwzhang0601 ▴ 80
1
vote
3
replies
2.8k
views
install augustus on MAC
AUGUSTUS
updated 7.2 years ago by 20 • written 7.8 years ago by ▴ 80
0
votes
1
reply
2.0k
views
InterProScan (v5) to get pathway annotation
InterProScan pathway GO
updated 7.2 years ago by 8.9k • written 7.2 years ago by ▴ 80
1
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0
replies
3.0k
views
Comment: C: differences between "-title database_title" and "-out database_name" for "makebl
7.2 years ago by qwzhang0601 ▴ 80
6
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3
replies
3.0k
views
differences between "-title database_title" and "-out database_name" for "makeblastdb" of Blast
Blast makeblastdb
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 80
0
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1
reply
11k
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Comment: C: List of species in RepeatMasker Tool (species parameter)
7.3 years ago by qwzhang0601 ▴ 80
0
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0
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9.9k
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Comment: C: Repeatmasker, Can't locate Text/Soundex.pm
7.3 years ago by qwzhang0601 ▴ 80
0
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1
reply
1.5k
views
Compare repeat elelemts among species
repeatmasker repeats
updated 7.3 years ago by 147k • written 7.3 years ago by ▴ 80
0
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3
replies
4.7k
views
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff Cufflink gffread
updated 7.5 years ago by • 0 • written 7.6 years ago by ▴ 80
0
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1
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3.6k
views
Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
7.7 years ago by qwzhang0601 ▴ 80
0
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0
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3.6k
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Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
7.7 years ago by qwzhang0601 ▴ 80
0
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5
replies
3.6k
views
multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree
updated 7.7 years ago by 21k • written 7.7 years ago by ▴ 80
0
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0
replies
1.6k
views
split genes in different scaffold or the same scaffold
genome annotation
7.7 years ago by qwzhang0601 ▴ 80
0
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0
replies
5.9k
views
Comment: C: BUSCOs running time
7.7 years ago by qwzhang0601 ▴ 80
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