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0
votes
0
replies
793
views
break_blocks & GATK switch REF & ALT alleles
vcf gatk
4.9 years ago by dec986 ▴ 380
0
votes
1
reply
1.5k
views
Break_blocks conversion of gvcf -> vcf
genome vcf
4.9 years ago by dec986 ▴ 380
6
votes
14
replies
3.4k
views
Alignment with STAR produces unique bam files, but identical output from bedtools multicov
bedtools STAR samtools
updated 4.9 years ago by 20 • written 8.6 years ago by ▴ 380
0
votes
1
reply
15k
views
Comment: C: Building Dict File for GATK
4.9 years ago by dec986 ▴ 380
1
vote
0
replies
1.3k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
4.9 years ago by dec986 ▴ 380
0
votes
1
reply
1.3k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
4.9 years ago by dec986 ▴ 380
1
vote
4
replies
1.3k
views
Break_blocks conversion of gvcf -> vcf
VCF
updated 4.9 years ago by 86k • written 4.9 years ago by ▴ 380
1
vote
1
reply
659
views
creating specific bed file from VCF
vcf vcf2bed
5.0 years ago by dec986 ▴ 380
0
votes
1
reply
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
0
replies
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
1
reply
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
1
reply
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
1
reply
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
0
replies
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
0
replies
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
0
votes
2
replies
3.3k
views
Comment: C: vcftools not ouputting log file when run from perl
5.0 years ago by dec986 ▴ 380
1
vote
0
replies
2.3k
views
Comment: C: Cannot identify software used to make image
5.8 years ago by dec986 ▴ 380
1
vote
1
reply
2.3k
views
Comment: C: Cannot identify software used to make image
5.8 years ago by dec986 ▴ 380
11
votes
6
replies
2.3k
views
Cannot identify software used to make image
DMR
updated 5.8 years ago by ★ 3.4k • written 5.8 years ago by ▴ 380
0
votes
0
replies
1.9k
views
Comment: C: Diploid calls on chrY?
5.9 years ago by dec986 ▴ 380
2
votes
6
replies
1.9k
views
Diploid calls on chrY?
genome vcf
updated 5.9 years ago by 16k • written 5.9 years ago by ▴ 380
0
votes
1
reply
1.9k
views
Comment: C: Diploid calls on chrY?
5.9 years ago by dec986 ▴ 380
0
votes
1
reply
3.0k
views
Comment: C: samtools sort doesn't finish sorting bam file, just hangs for hours
6.1 years ago by dec986 ▴ 380
4
votes
6
replies
3.0k
views
samtools sort doesn't finish sorting bam file, just hangs for hours
samtools
6.1 years ago by dec986 ▴ 380
0
votes
5
replies
2.9k
views
Zero Counts for many genes in 1 replicate, why?
cufflinks RNA-Seq
updated 24 months ago by 44k • written 9.5 years ago by ▴ 380
3
votes
2
replies
1.4k
views
Measure Sequencing Depth in aligned BAM file
RNA-Seq
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 380
1
vote
5
replies
3.7k
views
Differential Expression with Ballgown
RNA-Seq R
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 380
1
vote
10
replies
5.9k
views
how to get counts/TPM/etc. from stringtie?
RNA-Seq
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 380
0
votes
1
reply
5.9k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
6.4 years ago by dec986 ▴ 380
0
votes
1
reply
5.9k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
6.4 years ago by dec986 ▴ 380
0
votes
1
reply
5.9k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
6.4 years ago by dec986 ▴ 380
0
votes
0
replies
3.7k
views
Comment: C: Differential Expression with Ballgown
6.4 years ago by dec986 ▴ 380
0
votes
1
reply
3.7k
views
Comment: C: Differential Expression with Ballgown
6.4 years ago by dec986 ▴ 380
0
votes
1
reply
2.3k
views
Comment: C: R: Ballgown load fails
6.4 years ago by dec986 ▴ 380
2
votes
3
replies
2.3k
views
R: Ballgown load fails
RNA-Seq R software error
6.4 years ago by dec986 ▴ 380
0
votes
1
reply
4.7k
views
Comment: C: STAR Alignment Score reduced after trimming
6.4 years ago by dec986 ▴ 380
2
votes
1
reply
1.6k
views
samtools stats typical ranges and explicit definitions
samtools RNA-Seq
6.4 years ago by dec986 ▴ 380
4
votes
1
reply
3.5k
views
Meaning of Decimal points in ENST notation
rna-seq
updated 6.4 years ago by ▴ 640 • written 6.4 years ago by ▴ 380
0
votes
1
reply
11k
views
Comment: C: Automating Gorilla And/Or Revigo Analysis
6.6 years ago by dec986 ▴ 380
0
votes
0
replies
1.9k
views
MSigDB gene set enrichment analysis
gene ontology gsea
6.7 years ago by dec986 ▴ 380
0
votes
0
replies
2.5k
views
Comment: C: [Opinion] - What alignment software do you use?
6.7 years ago by dec986 ▴ 380
3
votes
3
replies
2.5k
views
Answer: A: [Opinion] - What alignment software do you use?
6.7 years ago by dec986 ▴ 380
0
votes
0
replies
5.6k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
6.8 years ago by dec986 ▴ 380
0
votes
0
replies
1.7k
views
Choice of Gene Length in TPM Calculations
RNA-Seq tpm
6.8 years ago by dec986 ▴ 380
0
votes
2
replies
1.3k
views
Creating genome alignment
STAR RNA-Seq
updated 6.8 years ago by ▴ 480 • written 6.8 years ago by ▴ 380
0
votes
0
replies
4.7k
views
Comment: C: STAR Alignment Score reduced after trimming
6.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.7k
views
Comment: C: STAR Alignment Score reduced after trimming
6.8 years ago by dec986 ▴ 380
8
votes
8
replies
4.7k
views
STAR Alignment Score reduced after trimming
STAR RNA-Seq
updated 6.8 years ago by 104k • written 6.8 years ago by ▴ 380
8
votes
1
reply
5.5k
views
STAR => featureCounts pipeline
RNA-Seq
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 380
3
votes
1
reply
1.5k
views
Trimmomatic destroys right-hand paired-end sequences, how to avoid?
trimmomatic qc
updated 6.9 years ago by ★ 3.1k • written 6.9 years ago by ▴ 380
215 results • Page 3 of 5
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