Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
5
votes
8
replies
2.2k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq DNA-Seq contamination QC
updated 13 months ago by • 0 • written 4.3 years ago by ▴ 250
0
votes
0
replies
786
views
Comment: Comment: How to convert Kallisto output to Salmon?
17 months ago by from the mountains ▴ 250
0
votes
1
reply
786
views
Comment: Comment: How to convert Kallisto output to Salmon?
17 months ago by from the mountains ▴ 250
2
votes
4
replies
786
views
How to convert Kallisto output to Salmon?
quantification rnaseq pseudo-alignment
17 months ago by from the mountains ▴ 250
0
votes
0
replies
1.1k
views
Comment: Comment: clarifying head-to-head and tail-to-tail inversions
2.2 years ago by from the mountains ▴ 250
3
votes
2
replies
1.1k
views
clarifying head-to-head and tail-to-tail inversions
SV delly
2.2 years ago by from the mountains ▴ 250
0
votes
1
reply
1.1k
views
Comment: Comment: add INFO tag to vcf with bcftools
updated 7 months ago by 44k • written 2.5 years ago by ▴ 250
1
vote
3
replies
1.1k
views
add INFO tag to vcf with bcftools
bcftools vcf
updated 7 months ago by 44k • written 2.6 years ago by ▴ 250
1
vote
0
replies
21k
views
Comment: Comment: Update 'ID' column in VCF file using BCFtools annotate
3.0 years ago by from the mountains ▴ 250
1
vote
0
replies
5.8k
views
Comment: Comment: bcftools multiallelic split not working
3.2 years ago by from the mountains ▴ 250
15
votes
8
replies
5.8k
views
bcftools multiallelic split not working
bcftools vcf
updated 14 months ago by 44k • written 3.3 years ago by ▴ 250
0
votes
0
replies
935
views
Comment: Comment: Making sense of genotype calculation equations
3.3 years ago by from the mountains ▴ 250
1
vote
1
reply
1.4k
views
getting paired end datasets from SRA
NCBI SRA
updated 3.3 years ago by 88k • written 3.3 years ago by ▴ 250
1
vote
2
replies
935
views
Making sense of genotype calculation equations
modeling concordance conpair
3.3 years ago by from the mountains ▴ 250
0
votes
0
replies
1.2k
views
Comment: Comment: How to extract reads for HLAscan
3.3 years ago by from the mountains ▴ 250
0
votes
2
replies
1.2k
views
How to extract reads for HLAscan
HLA genotyping NGS
3.3 years ago by from the mountains ▴ 250
3
votes
1
reply
6.2k
views
Answer: A: How to get real cell names from Seurat Object?
3.8 years ago by from the mountains ▴ 250
0
votes
0
replies
4.2k
views
Comment: C: Qualimap out of memory
3.9 years ago by from the mountains ▴ 250
0
votes
0
replies
3.7k
views
Comment: C: Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
3.9 years ago by from the mountains ▴ 250
0
votes
0
replies
952
views
ReadsPipelineSpark marking duplicates differently than MarkDuplicates
alignment gatk DNA-Seq
4.0 years ago by from the mountains ▴ 250
0
votes
1
reply
2.2k
views
Comment: C: looking for tools to detect RNA contamination in DNA
4.3 years ago by from the mountains ▴ 250
0
votes
1
reply
2.2k
views
Comment: C: looking for tools to detect RNA contamination in DNA
4.3 years ago by from the mountains ▴ 250
0
votes
0
replies
1.1k
views
requirements for qualimap gff file
QC exome
updated 4.4 years ago by 44k • written 4.4 years ago by ▴ 250
0
votes
0
replies
1.5k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
4.4 years ago by from the mountains ▴ 250
1
vote
2
replies
1.5k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
4.4 years ago by from the mountains ▴ 250
0
votes
0
replies
899
views
Comment: C: having trouble extracting paired reads from bam file
4.5 years ago by from the mountains ▴ 250
0
votes
1
reply
899
views
Comment: C: having trouble extracting paired reads from bam file
4.5 years ago by from the mountains ▴ 250
2
votes
4
replies
899
views
having trouble extracting paired reads from bam file
bam samtools alignment
4.5 years ago by from the mountains ▴ 250
0
votes
0
replies
7.8k
views
Comment: C: How can you convert a GATK interval_list file into a BED file
4.5 years ago by from the mountains ▴ 250
0
votes
1
reply
701
views
alignment strategies for rna fusion
RNA-Seq fusion alignment bowtie2
4.5 years ago by from the mountains ▴ 250
2
votes
1
reply
2.6k
views
STARsolo read1 length greater than cell barcode length and UMI length
RNA-Seq alignment single cell
4.7 years ago by from the mountains ▴ 250
1
vote
0
replies
11k
views
Answer: A: fastest UMAP method
5.1 years ago by from the mountains ▴ 250
1
vote
0
replies
5.1k
views
Comment: C: Seurat integrated analysis with replicates
5.2 years ago by from the mountains ▴ 250
0
votes
1
reply
5.1k
views
Comment: C: Seurat integrated analysis with replicates
5.2 years ago by from the mountains ▴ 250
3
votes
0
replies
8.8k
views
Comment: C: How to merge multiple single cell sequencing data after processing by CellRanger
5.2 years ago by from the mountains ▴ 250
0
votes
1
reply
5.1k
views
Comment: C: Seurat integrated analysis with replicates
5.2 years ago by from the mountains ▴ 250
6
votes
6
replies
5.1k
views
Seurat integrated analysis with replicates
RNA-Seq R single cell dropseq
updated 5.2 years ago by ★ 18k • written 5.2 years ago by ▴ 250
0
votes
1
reply
5.8k
views
Comment: C: How can I convert VCF to HGVS format?
5.2 years ago by from the mountains ▴ 250
0
votes
0
replies
4.8k
views
Comment: A: bwa mem: fail to locate the index files
5.3 years ago by from the mountains ▴ 250
2
votes
2
replies
2.7k
views
pacbio-illumina hybrid assemblies
assembly illumina pacbio hybrid assembly
updated 5.4 years ago by ▴ 80 • written 6.2 years ago by ▴ 250
10
votes
8
replies
18k
views
6 follow
How do I run Tophat?
tophat bowtie
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 250
2
votes
2
replies
1.9k
views
How to change filtering parameters in gff3 -> gtf conversion using gffread?
software error data formatting
6.1 years ago by from the mountains ▴ 250
0
votes
0
replies
1.9k
views
Comment: C: How to change filtering parameters in gff3 -> gtf conversion using gffread?
6.1 years ago by from the mountains ▴ 250
1
vote
1
reply
1.2k
views
any tool to join reads regardless of overlap?
merging
6.6 years ago by from the mountains ▴ 250
0
votes
0
replies
4.0k
views
Comment: C: bedtools getfasta chromosome not found
6.7 years ago by from the mountains ▴ 250
2
votes
8
replies
4.0k
views
bedtools getfasta chromosome not found
software error sequencing bedtools
6.7 years ago by from the mountains ▴ 250
0
votes
0
replies
4.0k
views
Comment: A: bedtools getfasta chromosome not found
6.7 years ago by from the mountains ▴ 250
0
votes
1
reply
4.0k
views
Comment: C: bedtools getfasta chromosome not found
6.7 years ago by from the mountains ▴ 250
0
votes
0
replies
4.0k
views
Comment: C: bedtools getfasta chromosome not found
6.7 years ago by from the mountains ▴ 250
0
votes
1
reply
2.5k
views
Comment: C: genemark-es gene-finding with reference and annotation
6.7 years ago by from the mountains ▴ 250
81 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6