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2.9k
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Manipulating header (and contents) of a vcf file
vcf variants sed
updated 8.8 years ago by 44k • written 8.8 years ago by ★ 1.6k
0
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0
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3.3k
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Comment: C: Problem running IGB on linux
8.8 years ago by kirannbishwa01 ★ 1.6k
2
votes
3
replies
4.3k
views
How can I best use -c in bwa mem for alignment and to find polymorphisms?
SNP bwa mapQ sequencing alignment
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
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0
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4.3k
views
Answer: A: How can I best use -c in bwa mem for alignment and to find polymorphisms?
8.8 years ago by kirannbishwa01 ★ 1.6k
7
votes
8
replies
3.3k
views
Problem running IGB on linux
Integrated-genome-browser shell IGB java
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
votes
0
replies
2.1k
views
Genotype matrix to vcf snp database
SNV vcf SNP genotype variants matrix
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
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0
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3.3k
views
Comment: Comment: Problem running IGB on linux
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
votes
0
replies
3.3k
views
Comment: C: Problem running IGB on linux
8.9 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
3.3k
views
Comment: C: Problem running IGB on linux
8.9 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
4.0k
views
Comment: C: Errors in sam file after bwa SAMPE alignment.
8.9 years ago by kirannbishwa01 ★ 1.6k
0
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1
reply
4.0k
views
Comment: C: Errors in sam file after bwa SAMPE alignment.
8.9 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
3.7k
views
Comment: C: error while using picard 2.1.0
8.9 years ago by kirannbishwa01 ★ 1.6k
5
votes
2
replies
3.7k
views
error while using picard 2.1.0
cleansam alignment gatk picard
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
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1
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4.0k
views
Comment: C: Errors in sam file after bwa SAMPE alignment.
8.9 years ago by kirannbishwa01 ★ 1.6k
4
votes
7
replies
4.0k
views
Errors in sam file after bwa SAMPE alignment.
bam sam bwa picard
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
3
votes
5
replies
2.2k
views
Handling/Extracting genome matrix file
snp allele-frequency vcf genome-matrix
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
votes
0
replies
2.2k
views
Comment: C: Handling/Extracting genome matrix file
8.9 years ago by kirannbishwa01 ★ 1.6k
0
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0
replies
2.2k
views
Comment: C: Handling/Extracting genome matrix file
8.9 years ago by kirannbishwa01 ★ 1.6k
0
votes
0
replies
3.0k
views
BWA mem vs. Sampe alignment
sequencing alignment snp BWA
8.9 years ago by kirannbishwa01 ★ 1.6k
1
vote
1
reply
2.9k
views
How to account for multiple mapping reads while calling variants?
SNP BWA alignment
updated 2.4 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
votes
0
replies
5.9k
views
Comment: C: Extracting annotation values from vcf files for plotting distribution
8.9 years ago by kirannbishwa01 ★ 1.6k
6
votes
7
replies
4.0k
views
How to remove kmer profiles?
kmers fastqc quality filtering attachments
updated 2.3 years ago by 44k • written 9.2 years ago by ★ 1.6k
3
votes
4
replies
5.9k
views
Extracting annotation values from vcf files for plotting distribution
SNP annotation
updated 2.6 years ago by 44k • written 8.9 years ago by ★ 1.6k
0
votes
0
replies
4.0k
views
Comment: Comment: How to remove kmer profiles?
updated 2.3 years ago by 44k • written 9.2 years ago by ★ 1.6k
0
votes
0
replies
1.4k
views
Details on alignment summary?
adapter_sequence alignment bwa samtools
updated 2.4 years ago by 44k • written 9.2 years ago by ★ 1.6k
0
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0
replies
4.0k
views
Comment: C: How to remove kmer profiles?
9.2 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
4.0k
views
Comment: Comment: How to remove kmer profiles?
updated 2.3 years ago by 44k • written 9.2 years ago by ★ 1.6k
0
votes
0
replies
4.0k
views
Comment: Comment: How to remove kmer profiles?
updated 2.3 years ago by 44k • written 9.2 years ago by ★ 1.6k
2
votes
4
replies
5.6k
views
Changing @RG header information in *.bam files using picard
bam picard RG-header sequence alignment
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 1.6k
0
votes
0
replies
5.6k
views
Comment: Comment: Changing @RG header information in *.bam files using picard
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 1.6k
0
votes
1
reply
5.7k
views
Comment: C: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
9.4 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
5.7k
views
Answer: A: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
9.4 years ago by kirannbishwa01 ★ 1.6k
20
votes
19
replies
5.7k
views
Viewing the tophat output (mapped.bam and junctions) along with genome coordinates/bases and mRNA annotations
alignment RNA-Seq igb
updated 2.0 years ago by 44k • written 9.5 years ago by ★ 1.6k
0
votes
0
replies
5.7k
views
Comment: C: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
9.5 years ago by kirannbishwa01 ★ 1.6k
0
votes
1
reply
5.7k
views
Comment: Comment: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 2.0 years ago by 44k • written 9.5 years ago by ★ 1.6k
0
votes
1
reply
5.7k
views
Answer: A: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
9.5 years ago by kirannbishwa01 ★ 1.6k
2
votes
4
replies
2.2k
views
Alignment of genomic resequenced data to reference genome
sequencing alignment genome A.lyrata Assembly
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 1.6k
0
votes
0
replies
2.2k
views
Answer: Answer: Alignment of genomic resequenced data to reference genome
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 1.6k
0
votes
0
replies
2.1k
views
Comment: Comment: Quality check for genomic reseq data and aligment to reference genome
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 1.6k
0
votes
2
replies
2.1k
views
Quality check for genomic reseq data and aligment to reference genome
sequence alignment DNAseq quality-check
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 1.6k
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