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4.2k
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Comment: C: Calculating Tajima's D from SNP frequency data
3.8 years ago by Jautis ▴ 580
0
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0
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4.0k
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Comment: C: A strange R limma voom function mean-variance trend
3.9 years ago by Jautis ▴ 580
0
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0
replies
8.5k
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Answer: A: 012 genotype matrix using vcf tools
4.0 years ago by Jautis ▴ 580
7
votes
15
replies
7.5k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 23 months ago by 44k • written 9.5 years ago by ▴ 580
0
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0
replies
670
views
GO based on NCBI annotation
genome enrichment GSEA GO
4.2 years ago by Jautis ▴ 580
0
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0
replies
1.3k
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Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
4.4 years ago by Jautis ▴ 580
0
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1
reply
14k
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Comment: C: How to remove a list of reads from fastq file?
4.4 years ago by Jautis ▴ 580
0
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0
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1.2k
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Convert VCF + LDhelmet Recombination Rates to EIGENSTRAT format
vcf linkage SNP genome
4.7 years ago by Jautis ▴ 580
0
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0
replies
1.1k
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find position of snps in cM, given recombination map from ldhelmet
recombination genome physical position
4.7 years ago by Jautis ▴ 580
0
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0
replies
2.9k
views
Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
4.7 years ago by Jautis ▴ 580
2
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2
replies
2.9k
views
sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf sed processing
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 580
0
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1
reply
15k
views
Comment: C: How to combine chromosome vcf files
4.8 years ago by Jautis ▴ 580
0
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0
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2.7k
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Comment: C: Phylogenetic distance betwee species
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 580
2
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0
replies
4.7k
views
Comment: C: Good Bioinformatics research papers
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 580
0
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1
reply
3.7k
views
Comment: C: Taking genotypes out of a vcf file
updated 5.1 years ago by 44k • written 9.3 years ago by ▴ 580
0
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0
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13k
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Comment: C: Calculating the bisulfite conversion rate
updated 5.1 years ago by 44k • written 9.4 years ago by ▴ 580
4
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2
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13k
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Answer: A: Calculating the bisulfite conversion rate
updated 5.1 years ago by 44k • written 9.4 years ago by ▴ 580
0
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0
replies
2.0k
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Comment: C: vcftools minDP filter not working for samtools genotype calling output
5.1 years ago by Jautis ▴ 580
1
vote
2
replies
2.0k
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vcftools minDP filter not working for samtools genotype calling output
genotype filtering SNP SNP-calling
5.1 years ago by Jautis ▴ 580
0
votes
1
reply
1.2k
views
Efficiently run blat for long sequences
blat alignment sequence assembly
updated 5.2 years ago by ★ 2.6k • written 5.2 years ago by ▴ 580
1
vote
1
reply
1.5k
views
Annotate CpG Islands for a new genome
CpG assembly annotation
updated 5.6 years ago by ★ 3.8k • written 5.6 years ago by ▴ 580
1
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8
replies
2.7k
views
Error in transferring annotations to a new assembly using RATT
alignment annotation software error Assembly
updated 5.8 years ago by 35k • written 5.9 years ago by ▴ 580
0
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2
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2.7k
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Comment: C: Error in transferring annotations to a new assembly using RATT
5.9 years ago by Jautis ▴ 580
0
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2
replies
2.7k
views
Comment: C: Error in transferring annotations to a new assembly using RATT
5.9 years ago by Jautis ▴ 580
2
votes
1
reply
2.7k
views
Create a pseudo-haploid fasta file based genotype calls for an individual (vcf file)
vcf sequence assembly SNP
updated 6.0 years ago by ★ 1.6k • written 6.0 years ago by ▴ 580
0
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0
replies
1.1k
views
Find SNPs which disrupt CpG sites
vcf genome variants
6.1 years ago by Jautis ▴ 580
0
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0
replies
1.6k
views
Determine the derived allele
alignment
6.3 years ago by Jautis ▴ 580
0
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0
replies
2.9k
views
Comment: C: GOseq with non-supported organism
6.3 years ago by Jautis ▴ 580
1
vote
2
replies
2.9k
views
GOseq with non-supported organism
GO GOseq R
6.3 years ago by Jautis ▴ 580
0
votes
1
reply
1.7k
views
Comment: C: Find chromosomal location of a scaffold
6.3 years ago by Jautis ▴ 580
0
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1
reply
1.7k
views
Comment: C: Find chromosomal location of a scaffold
6.3 years ago by Jautis ▴ 580
1
vote
5
replies
1.7k
views
Find chromosomal location of a scaffold
genome mapping
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 580
0
votes
1
reply
3.9k
views
Comment: C: Convert an altered sam file into a bam file
6.9 years ago by Jautis ▴ 580
3
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4
replies
3.9k
views
Convert an altered sam file into a bam file
sam bam sequencing
6.9 years ago by Jautis ▴ 580
0
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0
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1.9k
views
BSMap to Bismark bam file formats
next-gen sequencing bam bisulfite
7.0 years ago by Jautis ▴ 580
0
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0
replies
1.3k
views
Comment: C: Genotype calls for a list of variable sites
7.1 years ago by Jautis ▴ 580
0
votes
2
replies
1.3k
views
Genotype calls for a list of variable sites
genotype-calling GATK variant-calling
updated 7.1 years ago by 164k • written 7.1 years ago by ▴ 580
1
vote
0
replies
7.5k
views
Comment: C: Modifying fasta file based on vcf information
7.5 years ago by Jautis ▴ 580
10
votes
4
replies
6.4k
views
Comparing two phylogenies
covariance phylogeny tree
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 580
0
votes
1
reply
2.0k
views
Comment: C: Outputting DP4 flag in GATK
7.6 years ago by Jautis ▴ 580
2
votes
3
replies
2.0k
views
Outputting DP4 flag in GATK
variant calling sequencing gatk
updated 7.6 years ago by 5.8k • written 7.6 years ago by ▴ 580
0
votes
1
reply
1.8k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.7 years ago by Jautis ▴ 580
0
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0
replies
1.8k
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Comment: C: Getting reads that end at a digest site from a sam/bam file
7.7 years ago by Jautis ▴ 580
0
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7
replies
1.8k
views
Getting reads that end at a digest site from a sam/bam file
bisulfite digest
updated 7.7 years ago by 164k • written 7.7 years ago by ▴ 580
0
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1
reply
1.8k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.7 years ago by Jautis ▴ 580
0
votes
1
reply
1.9k
views
Calling allele-specific methylation from bisulfite sequencing reads
bisulfite-sequencing allele-specific sequencing
updated 7.8 years ago by 15k • written 7.8 years ago by ▴ 580
1
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1
reply
6.2k
views
Comment: C: Downsampling bam file to 2x coverage
7.9 years ago by Jautis ▴ 580
0
votes
1
reply
4.0k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.9 years ago by Jautis ▴ 580
0
votes
2
replies
6.2k
views
Comment: C: Downsampling bam file to 2x coverage
7.9 years ago by Jautis ▴ 580
0
votes
1
reply
4.0k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.9 years ago by Jautis ▴ 580
152 results • Page 2 of 4
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