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comments
5
votes
7
replies
6.2k
views
Downsampling bam file to 2x coverage
bam
sequencing
high-throughput
7.9 years ago by
Jautis
▴ 580
0
votes
0
replies
2.6k
views
Comment:
C: Batch effect of RRBS data (Methylation): Elimination and Pipleline
8.1 years ago by
Jautis
▴ 580
0
votes
1
reply
1.4k
views
high coverage but few genotype calls: possible causes?+
genotype calling
sequencing
SNP
8.5 years ago by
Jautis
▴ 580
3
votes
4
replies
6.2k
views
Compare tree topologies (Newick)
tree
phylogeny
gene
updated 8.8 years ago by
jhc
★ 3.0k • written 8.8 years ago by
Jautis
▴ 580
0
votes
1
reply
6.2k
views
Comment:
C: Compare tree topologies (Newick)
8.8 years ago by
Jautis
▴ 580
0
votes
1
reply
1.7k
views
Check for Msp1 digestion in sequencing data
RRBS
digestion
bisulfite-sequencing
msp1
updated 2.3 years ago by
Ram
44k • written 8.9 years ago by
Jautis
▴ 580
0
votes
0
replies
2.6k
views
Genome sites from BPM file
illumina
location
bpm
updated 2.3 years ago by
Ram
44k • written 9.0 years ago by
Jautis
▴ 580
2
votes
2
replies
2.7k
views
Phylogenetic distance betwee species
phylogenetics
newick
trees
updated 2.3 years ago by
Ram
44k • written 9.0 years ago by
Jautis
▴ 580
0
votes
0
replies
2.4k
views
Comment:
Comment: Fst from 012 genotype matrix
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
Jautis
▴ 580
0
votes
2
replies
2.4k
views
Fst from 012 genotype matrix
Fst
Genotype
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
Jautis
▴ 580
0
votes
0
replies
6.9k
views
Comment:
Comment: Is there a software that can compare phylogenetic trees to each othe (face to fa
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
Jautis
▴ 580
0
votes
0
replies
3.7k
views
Comment:
C: Taking genotypes out of a vcf file
9.3 years ago by
Jautis
▴ 580
2
votes
6
replies
3.7k
views
Taking genotypes out of a vcf file
vcf
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
Jautis
▴ 580
1
vote
0
replies
4.9k
views
Comment:
Comment: Using PhiX to estimate bisulfite conversion rate
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
1
vote
1
reply
1.7k
views
Answer:
Answer: Visually display genomic location of a list of genes
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
1
vote
0
replies
13k
views
Comment:
C: Calculating the bisulfite conversion rate
9.4 years ago by
Jautis
▴ 580
1
vote
1
reply
13k
views
Comment:
Comment: Calculating the bisulfite conversion rate
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
0
votes
1
reply
2.3k
views
Comment:
Comment: List or database of regulatory SNPs
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
1
vote
2
replies
13k
views
Comment:
Comment: Calculating the bisulfite conversion rate
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
0
votes
1
reply
13k
views
Comment:
Comment: Calculating the bisulfite conversion rate
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
4
votes
3
replies
2.4k
views
Making a haploid genome
vcf
haploid-genome
variant
updated 23 months ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
0
votes
1
reply
2.3k
views
Comment:
Comment: RRBS 5' trimming
updated 23 months ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
0
votes
1
reply
2.7k
views
Masking Variable Sites in a Fasta File
fasta
vcf
updated 23 months ago by
Ram
44k • written 9.4 years ago by
Jautis
▴ 580
0
votes
1
reply
3.0k
views
Finding differences between 2 fasta files
fasta
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
1.8k
views
Comment:
C: total number of peaks vs putative peaks
9.5 years ago by
Jautis
▴ 580
6
votes
4
replies
2.8k
views
Help simulating RRBS reads
methylation
RRBS
updated 22 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
7.5k
views
Comment:
C: Modifying fasta file based on vcf information
9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
1.8k
views
Comment:
C: total number of peaks vs putative peaks
9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
3.5k
views
Comment:
Comment: p53 upregulated in cancer cell line
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
1
vote
1
reply
2.3k
views
Comment:
Comment: What type of Bioinformatics analysis could I perform if I have DNA sequences of
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
2
replies
7.5k
views
Comment:
C: Modifying fasta file based on vcf information
9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
1.8k
views
Comment:
Comment: total number of peaks vs putative peaks
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
7.5k
views
Comment:
Comment: Modifying fasta file based on vcf information
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
7.5k
views
Comment:
Comment: Modifying fasta file based on vcf information
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
2
replies
2.9k
views
Comment:
Comment: looking for databases to download whole RNA RNA-seq data
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
2.6k
views
Comment:
C: How To Identify Targets of A Transcription Factor for Bos Taurus?
9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
2.9k
views
Answer:
Answer: looking for databases to download whole RNA RNA-seq data
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
1
vote
0
replies
31k
views
Answer:
Answer: Converting Sam To Bam
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
4.3k
views
Answer:
Answer: What does a allele frequency difference between 2 populations mean ?
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
3.4k
views
Comment:
Comment: How to get the differentially expressed genes in cancer cell lines
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
3.4k
views
Answer:
Answer: How to get the differentially expressed genes in cancer cell lines
updated 23 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
0
replies
3.5k
views
Comment:
Comment: SNPs, genotypes, HWE in GWAS,
updated 22 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
2
votes
1
reply
3.5k
views
Answer:
Answer: SNPs, genotypes, HWE in GWAS,
updated 22 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
7
votes
5
replies
2.6k
views
Filter fastq file by first two base pairs
fastq
updated 22 months ago by
Ram
44k • written 9.5 years ago by
Jautis
▴ 580
0
votes
1
reply
2.6k
views
Comment:
C: Filter fastq file by first two base pairs
9.5 years ago by
Jautis
▴ 580
6
votes
2
replies
1.6k
views
Comparing methods to genotype
RNA-Seq
genotyping
vcf
RRBS
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
Jautis
▴ 580
0
votes
0
replies
7.5k
views
Comment:
C: How can I calculate bisulfite conversion rate from RRBS data?
9.6 years ago by
Jautis
▴ 580
0
votes
0
replies
7.5k
views
Comment:
Comment: How can I calculate bisulfite conversion rate from RRBS data?
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Jautis
▴ 580
0
votes
1
reply
3.5k
views
Comment:
C: Calling SNPs from RRBS data
9.8 years ago by
Jautis
▴ 580
0
votes
2
replies
3.5k
views
Comment:
Comment: Calling SNPs from RRBS data
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Jautis
▴ 580
152 results • Page
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