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Answer: A: Open Reading Frame
8.5 years ago by EVR ▴ 610
3
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5
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9.4k
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Finding overlapping ranges in R
RNA-Seq R Overlapping-ranges
updated 8.5 years ago by ★ 3.2k • written 8.5 years ago by ▴ 610
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0
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1.2k
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Finidng the closest features near transcript boundaries in genome
RNA-Seq bedtools bedops joining-features
8.5 years ago by EVR ▴ 610
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4
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3.2k
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Extracing the regions outside the target(transctip) region in genome
RNA-Seq bedtools samtools bam_file genome
updated 8.5 years ago by 20 • written 8.6 years ago by ▴ 610
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2.3k
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Comment: C: RNASeq DE analysis between tumor and normal tissues
8.5 years ago by EVR ▴ 610
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7.8k
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Answer: A: TMM - Normalized FPKM values for RNASeq data ?
8.5 years ago by EVR ▴ 610
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1
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2.5k
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Answer: A: How to annotate one GenomicRanges object using another?
8.5 years ago by EVR ▴ 610
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3
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2.2k
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Reading bam files and extratcing transcript from abm files in R
RNA-Seq bam samtools
updated 8.5 years ago by 12k • written 8.5 years ago by ▴ 610
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2.2k
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Comment: C: Reading bam files and extratcing transcript from abm files in R
8.5 years ago by EVR ▴ 610
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0
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4.1k
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Comment: C: DESeq without replicate nbinomTest method
8.5 years ago by EVR ▴ 610
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1
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2.2k
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Comment: C: Detecting the peaks from RNAseq data
8.5 years ago by EVR ▴ 610
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4
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2.2k
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Detecting the peaks from RNAseq data
RNA-Seq peak bam
updated 8.5 years ago by ★ 5.2k • written 8.5 years ago by ▴ 610
3
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0
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9.0k
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Comment: C: heatmap.2 has become very slow in plotting heatmap.
8.5 years ago by EVR ▴ 610
2
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1
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12k
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Answer: A: How to get the alignment summary of HISAT2
8.5 years ago by EVR ▴ 610
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8.7k
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Comment: C: how to pool together biological replicates?
8.5 years ago by EVR ▴ 610
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2.2k
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Comment: C: taking intersection between two networks
8.5 years ago by EVR ▴ 610
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8.7k
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Answer: A: how to pool together biological replicates?
8.6 years ago by EVR ▴ 610
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1
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2.2k
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Comment: C: taking intersection between two networks
8.6 years ago by EVR ▴ 610
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2
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996
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Comment: C: Mappping read to its exact postion in genome
8.6 years ago by EVR ▴ 610
1
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4
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996
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Mappping read to its exact postion in genome
RNA-Seq TOPHAT
updated 8.6 years ago by 104k • written 8.6 years ago by ▴ 610
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1
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5.8k
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Comment: C: Mapping with tophat2 and setting a Tophat2 output directory?
8.6 years ago by EVR ▴ 610
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1
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1.3k
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Computing Genome Duplication
genome Duplication RNA-Seq
8.6 years ago by EVR ▴ 610
2
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0
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2.4k
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Answer: A: How to find differentially expressed genes after mapping with Stampy?
8.6 years ago by EVR ▴ 610
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2
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2.9k
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Comment: C: Counting reads within regions of interest
8.6 years ago by EVR ▴ 610
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5
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2.9k
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Counting reads within regions of interest
bam RNA-Seq coverage
8.6 years ago by EVR ▴ 610
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0
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3.2k
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Comment: C: Extracing the regions outside the target(transctip) region in genome
8.6 years ago by EVR ▴ 610
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1
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3.2k
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Comment: C: Extracing the regions outside the target(transctip) region in genome
8.6 years ago by EVR ▴ 610
0
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1
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24k
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Comment: C: Cleaning RNA-Seq data from rRNA
8.6 years ago by EVR ▴ 610
1
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2
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24k
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Answer: A: Cleaning RNA-Seq data from rRNA
8.7 years ago by EVR ▴ 610
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0
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4.4k
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Answer: A: statistical value meaning
8.7 years ago by EVR ▴ 610
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1
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4.2k
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Comment: C: Filtering by FPKM, opinions and thoughts
8.7 years ago by EVR ▴ 610
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1
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1.8k
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Comment: C: Counting reads on genome
8.7 years ago by EVR ▴ 610
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1
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2.8k
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Answer: A: How to split genome coverage by read length in Ribo-Seq data
8.7 years ago by EVR ▴ 610
1
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0
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2.8k
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Answer: A: How to split genome coverage by read length in Ribo-Seq data
8.7 years ago by EVR ▴ 610
0
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0
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2.7k
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Comment: C: Identifying full length transcripts in a transcriptome
8.7 years ago by EVR ▴ 610
0
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4
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1.8k
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Counting reads on genome
RNA-Seq genome transcriptome
updated 8.7 years ago by ★ 2.1k • written 8.7 years ago by ▴ 610
3
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6
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2.7k
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Identifying full length transcripts in a transcriptome
de-novo-Transcriptome full-length-transcripts
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 610
1
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5
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3.2k
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Aligning reads to genome together with transcriptome
RNA-Seq Genome Transcriptome alignment
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 610
1
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1
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1.1k
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Comment: Comment: relating the number with gene names in a list of genes
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 610
2
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1
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2.6k
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Answer: A: Trinity assembly and ORF decoder issue
8.8 years ago by EVR ▴ 610
0
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0
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2.7k
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Comment: C: Identifying full length transcripts in a transcriptome
8.9 years ago by EVR ▴ 610
1
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1
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4.4k
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Generating GTF file for de novo assmebled transcriptome
GTF Transcriptome
updated 9.0 years ago by 8.3k • written 9.0 years ago by ▴ 610
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4
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6.6k
views
Log2 fold change heatmap
Log2foldchange heatmap Microarray
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 610
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0
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6.6k
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Comment: C: Log2 fold change heatmap
9.0 years ago by EVR ▴ 610
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1
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5.2k
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Answer: A: Heatmap of Differentially Expressed Genes
9.0 years ago by EVR ▴ 610
1
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1
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2.6k
views
Quality control for AB Solid fastq files
Fastqc AB-Solid RNA-Seq
updated 2.3 years ago by 44k • written 9.1 years ago by ▴ 610
13
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10
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10k
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Finding the iIllumina index read from raw fastq file
RNA-Seq illumina index-read
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 610
0
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0
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10k
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Comment: C: Finding the iIllumina index read from raw fastq file
9.1 years ago by EVR ▴ 610
0
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2
replies
10k
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Comment: C: Finding the iIllumina index read from raw fastq file
9.1 years ago by EVR ▴ 610
0
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1
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10k
views
Comment: Comment: Finding the iIllumina index read from raw fastq file
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 610
172 results • Page 3 of 4
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