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12k
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Answer: Answer: WGCNA package in R: dendogram plot error
24 months ago by rodd ▴ 250
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3
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1.1k
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Brain cell type deconvolution
deconvolution RNA-seq cibersortx
updated 20 months ago by ▴ 370 • written 2.1 years ago by ▴ 250
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1.1k
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Comment: Comment: inverse normal transformation for gtex data
2.1 years ago by rodd ▴ 250
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1
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32k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
2.2 years ago by rodd ▴ 250
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1
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802
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Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
2.2 years ago by rodd ▴ 250
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3
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802
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Determining transcripts for repetitive elements in RNA-seq data
transcript rna-seq stringtie
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 250
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0
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32k
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Comment: Comment: How to calculate effect(beta) and SE from z-score and p-value?
3.4 years ago by rodd ▴ 250
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1
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5.7k
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Comment: Comment: PCAtools: everything Principal Components Analysis
3.6 years ago by rodd ▴ 250
2
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2
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2.0k
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Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
checkvcf reference allele 1000 genomes
updated 3.9 years ago by 20 • written 5.6 years ago by ▴ 250
4
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1
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12k
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Answer: A: How to get just protein_coding genes using biomart in R
4.1 years ago by rodd ▴ 250
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9.8k
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Comment: C: Obtaining rsIDs using BiomaRt or linux
4.1 years ago by rodd ▴ 250
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3
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1.5k
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Surrogate variables in eQTL studies
eqtl gtex covariates deseq2 sva
4.3 years ago by rodd ▴ 250
3
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1
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1.7k
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Answer: A: Best practices in eQTL analysis
4.3 years ago by rodd ▴ 250
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1
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1.5k
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Comment: C: Surrogate variables in eQTL studies
4.3 years ago by rodd ▴ 250
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2.8k
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Comment: C: Covariates for eQTL analysis
4.3 years ago by rodd ▴ 250
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0
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2.1k
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Comment: C: RNAseq Normalization for eQTL Mapping?
4.3 years ago by rodd ▴ 250
13
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7
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22k
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trimming fastq files with Trimmomatic
QC RNA-Seq
updated 24 months ago by 44k • written 9.6 years ago by ▴ 250
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0
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22k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
4.4 years ago by rodd ▴ 250
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1
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22k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
4.4 years ago by rodd ▴ 250
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1
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54k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
4.5 years ago by rodd ▴ 250
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0
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991
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Answer: A: Testing similarity between functional genomic annotations
5.0 years ago by rodd ▴ 250
3
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2
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991
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Testing similarity between functional genomic annotations
garfield functional genomics genomic annotations R
5.0 years ago by rodd ▴ 250
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0
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by rodd ▴ 250
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0
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18k
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Comment: C: filtering rRNA from fastq files or mapping results
5.1 years ago by rodd ▴ 250
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1
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by rodd ▴ 250
0
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1
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by rodd ▴ 250
0
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1
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by rodd ▴ 250
0
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1
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20k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
5.1 years ago by rodd ▴ 250
1
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0
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10.0k
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Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
23 months ago by rodd ▴ 250
0
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1
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10.0k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.1 years ago by rodd ▴ 250
0
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1
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10.0k
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Comment: C: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
5.1 years ago by rodd ▴ 250
13
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6
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1.8k
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Effect of gene size on WGCNA
wgcna gene size gene length deseq2
updated 5.1 years ago by 20k • written 5.1 years ago by ▴ 250
0
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0
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1.8k
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Comment: C: Effect of gene size on WGCNA
5.1 years ago by rodd ▴ 250
0
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1
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22k
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Comment: Comment: trimming fastq files with Trimmomatic
updated 24 months ago by 44k • written 9.6 years ago by ▴ 250
0
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0
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24k
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Comment: C: Lift-over on a VCF
5.2 years ago by rodd ▴ 250
0
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0
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24k
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Comment: C: Lift-over on a VCF
5.2 years ago by rodd ▴ 250
0
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0
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34k
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Comment: C: terminate called after throwing an instance of 'std::bad_alloc?
5.3 years ago by rodd ▴ 250
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1
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4.0k
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Comment: C: WGCNA error: "Error in cutreeDynamic"
5.3 years ago by rodd ▴ 250
1
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1
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13k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
5.3 years ago by rodd ▴ 250
0
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0
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31k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
5.4 years ago by rodd ▴ 250
1
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1
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31k
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
5.5 years ago by rodd ▴ 250
0
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1
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9.1k
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Comment: C: Generating heatmaps of pre-selected candidate genes after deseq2
5.5 years ago by rodd ▴ 250
2
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0
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16k
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Answer: A: How To Separate Snp Variants From Indel Variants In The Same Vcf File
5.6 years ago by rodd ▴ 250
0
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0
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18k
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Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
5.6 years ago by rodd ▴ 250
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0
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3.6k
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Answer: A: how to unzip Michigan imputation server output compressed folder
5.6 years ago by rodd ▴ 250
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0
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2.3k
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Comment: C: how to check if SNP falls in the exon region
5.7 years ago by rodd ▴ 250
0
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0
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11k
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Comment: C: deseq2 user defined size factors
5.7 years ago by rodd ▴ 250
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1
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11k
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Comment: C: deseq2 user defined size factors
5.7 years ago by rodd ▴ 250
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0
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27k
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Comment: C: How can I change the default path to which SRA files are downloaded?
5.9 years ago by rodd ▴ 250
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0
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11k
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Comment: C: download all samples from a study in BioProject
5.9 years ago by rodd ▴ 250
61 results • Page 1 of 2
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