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2
votes
2
replies
8.2k
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Answer: A: kraken: unable to download the databases from ncbi
6.8 years ago by Joseph Hughes ★ 3.0k
0
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0
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2.7k
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Comment: C: LoFreq outputing no SNP?
6.8 years ago by Joseph Hughes ★ 3.0k
1
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0
replies
1.5k
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Comment: C: Bacterial known pathway - the easiest way to find and download 1:1 orthologs to
6.8 years ago by Joseph Hughes ★ 3.0k
0
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0
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2.3k
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Comment: C: To get the name of the strains by searching assembly genome number GCF_
6.8 years ago by Joseph Hughes ★ 3.0k
2
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1
reply
2.3k
views
Answer: A: To get the name of the strains by searching assembly genome number GCF_
6.8 years ago by Joseph Hughes ★ 3.0k
2
votes
1
reply
7.0k
views
Answer: A: NGS data simulation: VarSim or BAMSurgeon?
6.8 years ago by Joseph Hughes ★ 3.0k
2
votes
2
replies
3.9k
views
Answer: A: How to retrieve nucleotid sequence from gene ids of ncbis "gene" data base?
6.8 years ago by Joseph Hughes ★ 3.0k
0
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0
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3.9k
views
Comment: C: How to retrieve nucleotid sequence from gene ids of ncbis "gene" data base?
6.8 years ago by Joseph Hughes ★ 3.0k
0
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0
replies
1.2k
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Comment: C: Parameter to check atleast 75% consensus of each nucleotide
6.8 years ago by Joseph Hughes ★ 3.0k
2
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0
replies
1.5k
views
Answer: A: Where can I find bisulfite sample data to practice trimming, mapping and methyla
6.8 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
1.2k
views
Answer: A: Parameter to check atleast 75% consensus of each nucleotide
6.8 years ago by Joseph Hughes ★ 3.0k
3
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0
replies
2.5k
views
Answer: A: Multiple Sequence Alignment quality comparison
6.9 years ago by Joseph Hughes ★ 3.0k
4
votes
1
reply
9.4k
views
Answer: A: Interpretation of Kraken results
6.9 years ago by Joseph Hughes ★ 3.0k
2
votes
1
reply
1.8k
views
Answer: A: Comparision of R packages in RNA-Seq
6.9 years ago by Joseph Hughes ★ 3.0k
2
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1
reply
1.9k
views
Answer: A: Get reference full genome sequences for selected organisms
6.9 years ago by Joseph Hughes ★ 3.0k
0
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0
replies
2.0k
views
Answer: A: Alternative to Jmodeltest?
7.0 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.7k
views
Answer: A: Can I infer phylogenetic relations with partial and whole genomes of an organism
7.0 years ago by Joseph Hughes ★ 3.0k
4
votes
1
reply
1.4k
views
How to download an unspliced transcript for a given Ensembl ID using the perl API
ensembl unspliced transcript
updated 7.0 years ago by 24k • written 7.0 years ago by ★ 3.0k
2
votes
1
reply
6.5k
views
Answer: A: Extract reads from fasta file (specific read_names)and make a new fasta file
7.0 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
1.7k
views
Answer: A: Perl code for counting number of bases
7.0 years ago by Joseph Hughes ★ 3.0k
15
votes
1
reply
7.5k
views
Tutorial: A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
psl SAM blast BED
updated 18 months ago by 44k • written 7.0 years ago by ★ 3.0k
0
votes
0
replies
1.3k
views
Answer: A: How To Extract Title And /Isolation_Source From A List Of Genbank Accession Numb
7.0 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.8k
views
Answer: A: Where to find Drosophila melanogaster de novo transcript assembly data?
7.0 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.5k
views
Job: Research Database Engineer, MRC-University of Glasgow Centre for Virus Research, Glasgow, UK
virus database-engineer
updated 18 months ago by 44k • written 7.1 years ago by ★ 3.0k
2
votes
0
replies
1.5k
views
Answer: A: Zoomable phylogenetic tree as interface to mySQL database
7.1 years ago by Joseph Hughes ★ 3.0k
2
votes
0
replies
1.9k
views
Job: Deadline for application is the 8th of October: Bioinformatician/Biological Data Scientist - two posts : Glasgow, United Kingdom
bioinformatician virus
updated 18 months ago by 44k • written 7.2 years ago by ★ 3.0k
0
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1
reply
3.8k
views
Answer: A: findMotifsGenome.pl Homer using "RNA"
7.2 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
2.5k
views
Answer: A: To retrieve bacterial Phylum and Class information from a set of tax id
7.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
3.9k
views
Comment: C: Distance matrix plot issue
7.3 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.5k
views
Comment: C: Adaptors Sequences and Trimming
7.3 years ago by Joseph Hughes ★ 3.0k
0
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0
replies
2.0k
views
Answer: A: Pseudogene identification and classification
7.3 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
3.9k
views
Answer: A: Distance matrix plot issue
7.3 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.8k
views
Answer: A: Phylogenetic tree support for a user-defined partition
7.4 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.5k
views
Answer: A: 'ORIGIN' flag missing in GenBank files
7.6 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
2.6k
views
Answer: A: Is it possible to plot a radiation tree with ggtree? how?
7.6 years ago by Joseph Hughes ★ 3.0k
0
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0
replies
1.6k
views
Answer: A: Finding the common ancestor/origin of gene families
7.6 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.8k
views
Answer: A: How to do ancestor reconstruction given a tree and gene (name only) for every sp
7.6 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
2.9k
views
Answer: A: Software for counting mutations over a tree
7.7 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.2k
views
Job: bioinformatician post in the microbiology department at Glasgow Royal, UK
pipeline next-gen-sequencing
updated 19 months ago by 44k • written 7.8 years ago by ★ 3.0k
0
votes
0
replies
5.6k
views
Comment: C: Viewing chimeric reads on IGV
7.8 years ago by Joseph Hughes ★ 3.0k
3
votes
0
replies
12k
views
Answer: A: Help with ggtree tip labeling in R
7.8 years ago by Joseph Hughes ★ 3.0k
0
votes
1
reply
5.6k
views
Answer: A: Viewing chimeric reads on IGV
7.8 years ago by Joseph Hughes ★ 3.0k
0
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0
replies
1.9k
views
Comment: C: Comparing unequal trees
7.9 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
9.2k
views
Answer: A: How to order Admixture (ancestry) plot in R
7.9 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
2.9k
views
Answer: A: Metrics to evaluate tree congruence
7.9 years ago by Joseph Hughes ★ 3.0k
3
votes
1
reply
1.9k
views
Answer: A: Comparing unequal trees
7.9 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
5.2k
views
Answer: A: Bootstrap values on newick tree
7.9 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
4.2k
views
Answer: A: MEGA: Infer ancestral states
7.9 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.8k
views
Answer: A: Pruning a reference phylogenetic tree according to input species
7.9 years ago by Joseph Hughes ★ 3.0k
3
votes
1
reply
5.2k
views
Answer: A: Mapping scaffolds to another reference genome
7.9 years ago by Joseph Hughes ★ 3.0k
250 results • Page 2 of 5
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