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Which plan is more reasonable, gsea on total dataset , on subset of total dataset with DEG or preRanked gsea?
GSEA DEG
updated 8.6 years ago by 13k • written 8.6 years ago by ▴ 220
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4.0k
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Comment: C: which set of results are more reliable and precise for DEG analysis, limma vs GS
8.6 years ago by Shamim Sarhadi ▴ 220
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1
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4.0k
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Comment: C: which set of results are more reliable and precise for DEG analysis, limma vs GS
8.6 years ago by Shamim Sarhadi ▴ 220
6
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13
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4.0k
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which set of results are more reliable and precise for DEG analysis, limma vs GSEA ?
DEG Limma GSEA
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 220
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0
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1.4k
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Selecting present prob-id after performing pa.calls function from panp package on eSet
pa.calls filtering eSet
8.6 years ago by Shamim Sarhadi ▴ 220
4
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4
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9.7k
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cannot allocate vector of size 64.1 Mb
memory managmet
updated 8.6 years ago by 20 • written 8.7 years ago by ▴ 220
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9.7k
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Comment: C: cannot allocate vector of size 64.1 Mb
8.6 years ago by Shamim Sarhadi ▴ 220
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1
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9.7k
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Comment: C: cannot allocate vector of size 64.1 Mb
8.7 years ago by Shamim Sarhadi ▴ 220
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1.7k
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Answer: A: gene list -interactions
8.7 years ago by Shamim Sarhadi ▴ 220
1
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2.4k
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Answer: A: Differential gene expression
8.7 years ago by Shamim Sarhadi ▴ 220
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0
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4.4k
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Comment: C: Microarray adata Normalization using GEO2R?
8.7 years ago by Shamim Sarhadi ▴ 220
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1.6k
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Comment: C: A rational way for selecting the number of DEG with significant p-value for GSEA
8.7 years ago by Shamim Sarhadi ▴ 220
0
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2
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1.6k
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A rational way for selecting the number of DEG with significant p-value for GSEA
DEG GSEA
updated 8.7 years ago by 8.3k • written 8.7 years ago by ▴ 220
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1.7k
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Comment: C: protein structure modeling
8.7 years ago by Shamim Sarhadi ▴ 220
0
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1
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1.7k
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Comment: C: protein structure modeling
8.7 years ago by Shamim Sarhadi ▴ 220
2
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5
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1.7k
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protein structure modeling
protein modeling
updated 8.7 years ago by ★ 1.2k • written 8.7 years ago by ▴ 220
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0
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1.7k
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Comment: C: drop levels in eSet pData
8.7 years ago by Shamim Sarhadi ▴ 220
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0
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2.6k
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Comment: C: subsetting of expressionSet
8.7 years ago by Shamim Sarhadi ▴ 220
0
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2
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1.7k
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drop levels in eSet pData
eSet subsetting
updated 8.7 years ago by 6.6k • written 8.7 years ago by ▴ 220
1
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0
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1.7k
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giving weight to DEG from limma output
GSEA limma DEG
8.7 years ago by Shamim Sarhadi ▴ 220
0
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0
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1.8k
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Conversion of Eset to gct file
gct eset
updated 20 months ago by 44k • written 8.7 years ago by ▴ 220
1
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2
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2.6k
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subsetting of expressionSet
R bioconductor
updated 8.7 years ago by ▴ 100 • written 8.7 years ago by ▴ 220
3
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1
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3.7k
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Answer: A: Bioinformatics for a medical student with interest in genetics
8.7 years ago by Shamim Sarhadi ▴ 220
0
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1
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1.9k
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Comment: C: I'm looking for a filtering method that it does't use genewise variances
8.9 years ago by Shamim Sarhadi ▴ 220
2
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4
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1.9k
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I'm looking for a filtering method that it does't use genewise variances
R genefilter limma
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 220
2
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2
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1.7k
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normalizing methods for microarray
R bioconductor statistics
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 220
4
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5
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6.7k
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sorting my data based on p-value
R statistics
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 220
0
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0
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33k
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Comment: Comment: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 220
0
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0
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3.6k
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Comment: Comment: creating a heatmap from ExpressionSet
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
0
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0
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2.5k
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Comment: Comment: converting Probs Id to gene name
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
0
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1
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2.5k
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Comment: Comment: converting Probs Id to gene name
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
0
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1
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2.5k
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Comment: Comment: converting Probs Id to gene name
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
3
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6
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2.5k
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converting Probs Id to gene name
genome R
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
0
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0
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72k
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Comment: Comment: Converting Affymetrix Probes To Gene Ids
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
7
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5
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3.6k
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creating a heatmap from ExpressionSet
R
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 220
0
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0
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3.6k
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Comment: C: creating a heatmap from ExpressionSet
9.3 years ago by Shamim Sarhadi ▴ 220
0
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1
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1.4k
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what is the best way for crass platform gene expression analysis?
genome R
updated 23 months ago by 44k • written 9.4 years ago by ▴ 220
0
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1
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7.9k
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Comment: Comment: Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
updated 22 months ago by 44k • written 9.5 years ago by ▴ 220
0
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0
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2.1k
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Comment: Comment: access to dataset in insilicodb
updated 21 months ago by 44k • written 9.5 years ago by ▴ 220
0
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1
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1.1k
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integrate of microarray
software error
9.5 years ago by Shamim Sarhadi ▴ 220
90 results • Page 2 of 2
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