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610
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Comment: Comment: isoformSwithAnalyzeR importRdata error
10 months ago by Kristoffer Vitting-Seerup ★ 4.1k
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1
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1.3k
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Comment: Comment: IsoformSwitchAnalyserR lmportR data warning.
17 months ago by Kristoffer Vitting-Seerup ★ 4.1k
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1
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1.3k
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Answer: Answer: IsoformSwitchAnalyserR lmportR data warning.
17 months ago by Kristoffer Vitting-Seerup ★ 4.1k
3
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Job: Challenging, fully funded post-doctoral position in probabilistic modelling. Denmark
alternative-splicing omics isoforms
updated 17 months ago by 44k • written 17 months ago by ★ 4.1k
2
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0
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893
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Job: Fully funded PhD opening in transcriptomics and isoform analysis
transcriptomics isoforms RNA-seq alternative-splicing
updated 17 months ago by 44k • written 17 months ago by ★ 4.1k
0
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1
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5.5k
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Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
19 months ago by Kristoffer Vitting-Seerup ★ 4.1k
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0
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1.0k
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Comment: Comment: switchAnalyzeRlist conditions reversed
2.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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2
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1.0k
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Answer: Answer: switchAnalyzeRlist conditions reversed
2.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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883
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Answer: Answer: IsoformSwitchAnalyzer is not accepting CPAT result file
2.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
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0
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607
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Answer: Answer: Alternative splicing in gencode annotations
2.8 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
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1
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1.1k
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Answer: Answer: Any tool to detect differential splicing of a gene between samples?
2.8 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
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0
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1.3k
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Answer: Answer: novel AS events detection from RNA seq
2.9 years ago by Kristoffer Vitting-Seerup ★ 4.1k
3
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1
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2.1k
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Answer: A: Quantify Isoforms in RNA-Seq data
4.0 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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2.5k
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Answer: A: Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
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0
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1.3k
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Answer: A: Resolving expression profiles of genes with same name but different MSTRG ID
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
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1.7k
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Answer: A: I get different ENSG IDs for the same MSTRG ID
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
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3.5k
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Answer: A: Stringie output doesn't have any gene names!
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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5.6k
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Answer: A: gene IDs in stringtie output
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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2.3k
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Answer: A: StringTie --merge creates the same id for neighbouring genes
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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2.7k
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Answer: A: StringTie - A transcript matching to multiple genes
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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20k
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Answer: A: How to deal with MSTRG tag without relevant gene name?
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
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0
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1.7k
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Comment: C: Ambiguous results of RNA-Seq data using stringtie with edgeR
4.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.2k
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Comment: C: Packages in R for analyze premature stop codon and GC contents
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.2k
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Answer: A: Normalization for comparing expression statistics across sample and gene groups
4.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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1.7k
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Comment: C: Ambiguous results of RNA-Seq data using stringtie with edgeR
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
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1.2k
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Answer: A: Ribo-seq data analysis using an RNA-Seq analysis pipeline
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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3.0k
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Comment: C: Is it possible to identify different expressed genes by using TPM?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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2.2k
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Comment: C: Strange Mean-Variance plot after Voom Normalization (RNAseq)
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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16k
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Comment: C: Tools To Do the Alternative Splicing Analysis
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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3.1k
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Comment: C: Missing assembled transcripts after Stringtie merge
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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3.1k
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Comment: C: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.8k
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Comment: C: differential expression with cuffdiff
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.8k
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Answer: A: Alternative Splicing detection and tools (Kallisto, sleuth, isoformSwitchAnalyze
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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1.8k
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Answer: A: differential expression with cuffdiff
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.8k
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Comment: C: differential expression with cuffdiff
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
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1
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3.1k
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Answer: A: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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3.1k
views
Comment: C: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
4.4 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
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1.3k
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Answer: A: Merged vs. Ensembl GTF for htseq-count
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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752
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Answer: A: what should I do first: transciptome annotation or DE analysis?
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.3k
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Comment: C: ERROR Cuffmerge for differential gene and expression analysis?
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.1k
3
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0
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8.5k
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Answer: C: Why 'filterByExpr' does not eliminate low read counts from the expression data?
4.5 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
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1.5k
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Answer: A: cufflinks result interpretation
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.5k
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Comment: C: cufflinks result interpretation
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.1k
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Comment: C: How to distinguish FPKM from TPM?
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.2k
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Comment: C: salmon TPM output to linear regression in R
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.4k
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Comment: C: how to know the isoform length and exon number of particular gene from rna sampl
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
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1.4k
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Answer: A: how to know the isoform length and exon number of particular gene from rna sampl
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
replies
1.2k
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Answer: A: Infer strandedness of my single-end RNA-Seq data
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
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1
reply
2.7k
views
Answer: A: Stringtie duplicate transcripts
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
729
views
Answer: A: StringTie required filtered BAM
4.6 years ago by Kristoffer Vitting-Seerup ★ 4.1k
489 results • Page 1 of 10
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