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5
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2
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4.4k
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Answer: A: What is the difference between deferentially expressed genes and deferentially
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.5k
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Answer: A: Queries regarding RNASeq sequencing
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.4k
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Comment: C: Get counts for allele specific expression analysis
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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3.7k
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Answer: A: Finding FASTQ files for TCGA Data
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
4
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0
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10k
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Answer: A: correlations between principal components and known variables
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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2
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1.5k
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Answer: A: CPAT error while analysis
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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18k
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Comment: C: Faster way to get GC content and Coverage from .fasta
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
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1.5k
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Comment: C: CPAT error while analysis
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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2.5k
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Comment: C: Run ASTALAVISTA for large number of files
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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1
reply
2.5k
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Comment: C: Run ASTALAVISTA for large number of files
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
2.5k
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Answer: A: Run ASTALAVISTA for large number of files
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
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1.3k
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Comment: C: How splice-aware aligner (RNA-Seq) deal with long gap (intron) penalty
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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5.3k
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Comment: C: edgeR gives no DE genes <0.05 FDR
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
1.8k
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Answer: A: how to change gtf to fasta file of cufflink, gffread
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
3
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0
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4.6k
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Answer: A: Transcript vs. Gene TPM counts?
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
2.5k
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Comment: C: Run ASTALAVISTA for large number of files
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
replies
3.5k
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Comment: C: Stringie output doesn't have any gene names!
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
2.2k
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Comment: C: GSEA for paired RNA-Seq data
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
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0
replies
1.7k
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Answer: A: STAR: Is it ok to align with an index created from genecode but count features f
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
votes
1
reply
3.5k
views
Answer: A: Stringie output doesn't have any gene names!
5.1 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
3.5k
views
Comment: C: Stringie output doesn't have any gene names!
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
2
votes
1
reply
2.2k
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Answer: A: GSEA for paired RNA-Seq data
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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1.1k
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Answer: A: how to identify gene expression and genes responsible for virulence
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
3
votes
0
replies
1.2k
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Equivavalent of rlog() or vst() for abundance values
RNA-Seq
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
0
replies
7.5k
views
Answer: C: Salmon tximport get TPM
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
1.1k
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Comment: C: how to identify gene expression and genes responsible for virulence
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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4
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2.4k
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Answer: A: Do varying amounts of input RNA for library preperation have an effect on differ
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
0
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2.4k
views
Comment: C: Do varying amounts of input RNA for library preperation have an effect on differ
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
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2.0k
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Comment: C: Is there a good way to do a PCA of gene expression including samples from differ
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
0
replies
2.0k
views
Answer: A: Is there a good way to do a PCA of gene expression including samples from differ
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
3.9k
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Comment: C: Normalization of allele specific counts in RNA-seq
5.2 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
1.2k
views
Answer: A: Feature selection for differential analysis
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
1.1k
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Comment: C: transcript assembling problem by cufflinks
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
1.1k
views
Comment: C: transcript assembling problem by cufflinks
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
1.7k
views
Answer: A: Can you choose minimum transcript coverage in salmon
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
3.9k
views
Comment: C: Normalization of allele specific counts in RNA-seq
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
3.9k
views
Comment: C: Normalization of allele specific counts in RNA-seq
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
3.9k
views
Comment: C: Normalization of allele specific counts in RNA-seq
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
votes
0
replies
1.9k
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Comment: C: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
13k
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Comment: C: How to normalized TPM with TMM method?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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1
reply
13k
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Comment: C: How to normalized TPM with TMM method?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
3.4k
views
Comment: C: how to caculate effective length for RNA sequencing?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
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0
replies
3.4k
views
Comment: C: how to caculate effective length for RNA sequencing?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
votes
1
reply
13k
views
Comment: C: How to normalized TPM with TMM method?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
votes
0
replies
1.5k
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Answer: A: Suggestions for avoiding False Positives while identifying differentially expres
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
3
votes
1
reply
5.0k
views
Answer: A: Why run FeatureCounts after Stringtie? (Galaxy recommends!)
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
3.9k
views
Answer: A: Normalization of allele specific counts in RNA-seq
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
1.6k
views
Answer: A: Any database with RNA-Seq signal files for GTEx data?
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
0
votes
0
replies
3.6k
views
Comment: C: Best way to address different batches of RNA-seq
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
1
vote
1
reply
848
views
Comment: C: Alternative first exon annotation database
5.3 years ago by Kristoffer Vitting-Seerup ★ 4.1k
489 results • Page 3 of 10
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