Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
4.4k
views
Answer: A: RPKM and TPM calculation
updated 5.9 years ago by 88k • written 5.9 years ago by ★ 4.2k
4
votes
2
replies
2.2k
views
Answer: A: Can I perform differential gene expression with samples from Poly-A and Ribo-dep
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
1
reply
2.4k
views
Answer: A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
2.4k
views
Answer: A: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
0
replies
1.3k
views
Answer: A: How to create 2 seurat objects after subsetting data
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.6k
views
Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
2.1k
views
Comment: C: HISAT2/stringtie: intron impact on expression
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
3.9k
views
Comment: C: How to create custom gtf annotation file?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
1.9k
views
Comment: C: How to import RSEM expected_count data in ucsc to a deseq2 object ?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
10k
views
Comment: C: How single sample GSEA works
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
10k
views
Comment: C: How single sample GSEA works
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
2.1k
views
Comment: C: HISAT2/stringtie: intron impact on expression
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
4.5k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
10k
views
Comment: C: How single sample GSEA works
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
1.3k
views
Comment: C: How to Align only few transcript and get count?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
4.5k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
5.0k
views
Comment: C: Can I compare TPM values for a transcript across different transcriptome assembl
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.6k
views
Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
3
replies
5.0k
views
Answer: A: Can I compare TPM values for a transcript across different transcriptome assembl
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.6k
views
Comment: C: Is it possible to use gene count table (.csv) in ballgown package to determine d
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
2.1k
views
Answer: A: HISAT2/stringtie: intron impact on expression
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
4.5k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
votes
1
reply
4.5k
views
Comment: C: How to quantify gene expression when stringtie considers two adjacent genes as s
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
0
replies
2.8k
views
Comment: C: How to remove cell cycle effct when analysing scRNA-seq data?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
1
reply
2.8k
views
Answer: A: How to remove cell cycle effct when analysing scRNA-seq data?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
5.0k
views
Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
3
replies
5.0k
views
Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
votes
1
reply
4.5k
views
Answer: A: How to quantify gene expression when stringtie considers two adjacent genes as s
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
1.5k
views
Comment: C: extraction significant genes
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
5.0k
views
Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
5.0k
views
Comment: C: RNAseq - how to find novel transcripts in under different treatment using string
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
18k
views
Comment: C: How to do FPKM differential analysis?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.5k
views
Comment: C: extraction significant genes
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
3.7k
views
Answer: A: how to caculate effective length for RNA sequencing?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
votes
2
replies
18k
views
Comment: A: How to do FPKM differential analysis?
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
2.2k
views
Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
votes
1
reply
4.4k
views
Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
5.9 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
1
reply
4.4k
views
Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
1
vote
1
reply
1.3k
views
Answer: A: filter transcript isoforms with low support
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
votes
1
reply
4.4k
views
Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
votes
1
reply
4.4k
views
Answer: A: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
1.2k
views
Comment: A: IsoformSwitchAnalyzeR and cuffdiff data error
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
3
votes
0
replies
5.1k
views
Comment: C: Which bias flags to run with Salmon before DESeq2 analysis?
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.5k
views
Comment: C: inconsistent results of rsem quantification
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
4
votes
1
reply
5.3k
views
Answer: A: RNAseq: how to make design matrix for limma
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
1
reply
23k
views
Comment: C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
7.8k
views
Answer: A: convert genome file to transcriptome file
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
4.8k
views
Comment: C: limma voom - mean variance trend
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
2
votes
0
replies
1.3k
views
Answer: A: Intron finder for 3' UTR sequences (non-model organism)?
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
0
votes
0
replies
1.3k
views
Comment: C: Intron finder for 3' UTR sequences (non-model organism)?
6.0 years ago by Kristoffer Vitting-Seerup ★ 4.2k
489 results • Page 4 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6