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3
votes
3
replies
2.3k
views
Cuffdiff results transcript testing
cuffdiff RNA-seq
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
0
votes
9
replies
2.4k
views
Tophat mapping less reads (and less properly paired) when more real -r is specified?
tophat RNA-Seq
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
0
votes
1
reply
2.4k
views
Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
9.3 years ago by manekineko ▴ 150
0
votes
1
reply
2.4k
views
Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
9.3 years ago by manekineko ▴ 150
0
votes
0
replies
2.4k
views
Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
9.3 years ago by manekineko ▴ 150
0
votes
1
reply
5.3k
views
Comment: C: Mean insert size and Mean inner distance between mate pairs
9.3 years ago by manekineko ▴ 150
3
votes
3
replies
5.3k
views
Mean insert size and Mean inner distance between mate pairs
RNA-Seq
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
0
votes
0
replies
2.6k
views
Comment: Comment: Check is RNA-seq mapping (tophat) is performed ok (hg38)?
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
2
votes
5
replies
2.6k
views
Check is RNA-seq mapping (tophat) is performed ok (hg38)?
tophat RNA-Seq
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
0
votes
1
reply
2.6k
views
Comment: Comment: Check is RNA-seq mapping (tophat) is performed ok (hg38)?
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 150
6
votes
6
replies
4.7k
views
Very short reads (20-22) , bowtie and tophat not doing gapped alignment
RNA-Seq
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 150
1
vote
5
replies
5.1k
views
Problems with STAR mapping output
RNA-Seq STAR
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
6.5k
views
Comment: C: multiple paired-end files for one sample?
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
6.5k
views
Comment: C: multiple paired-end files for one sample?
9.4 years ago by manekineko ▴ 150
2
votes
6
replies
6.5k
views
multiple paired-end files for one sample?
RNA-Seq
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
4.6k
views
Comment: C: htseq-count not working with miRbase gff?
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
4.6k
views
Comment: A: htseq-count not working with miRbase gff?
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
4.6k
views
Comment: Comment: htseq-count not working with miRbase gff?
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
2
replies
1.7k
views
miRNAs differential expression with no replicates
mirna
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
4
replies
4.7k
views
Deseq web-based (with GUI)
RNA-Seq
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
3
votes
4
replies
3.7k
views
bowtie options for exact match with reference short sequence
bowtie exact option
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
0
replies
3.7k
views
Comment: C: bowtie options for exact match with reference short sequence
9.4 years ago by manekineko ▴ 150
1
vote
0
replies
31k
views
Comment: Comment: Merge Paired-End Reads
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
9.0k
views
Comment: Comment: Mirna-Seq Trimming And Mapping?
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
6
replies
7.5k
views
Removing barcode and adapters?
sequencing adapters
updated 2.0 years ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
7.5k
views
Comment: C: Removing barcode and adapters?
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
7.5k
views
Answer: A: Removing barcode and adapters?
9.4 years ago by manekineko ▴ 150
0
votes
0
replies
2.5k
views
Comment: Comment: htseq-count counts all reads as no_feature
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
2
votes
4
replies
2.5k
views
htseq-count counts all reads as no_feature
htseq-count
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
1.3k
views
Comment: C: Way to check if there is local trimmed alihned reads BOWTIE2
9.4 years ago by manekineko ▴ 150
2
votes
4
replies
1.3k
views
Way to check if there is local trimmed alihned reads BOWTIE2
bowtie2
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
4.7k
views
Comment: C: Very short reads (20-22) , bowtie and tophat not doing gapped alignment
9.4 years ago by manekineko ▴ 150
0
votes
0
replies
3.8k
views
Comment: C: low % of read map to mirase mature miRNAs
9.4 years ago by manekineko ▴ 150
0
votes
0
replies
3.8k
views
Comment: C: low % of read map to mirase mature miRNAs
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
2.5k
views
Comment: Comment: htseq-count counts all reads as no_feature
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
2.0k
views
GFF model in Tophat and/or Cufflinks?
RNA-Seq
updated 9.4 years ago by ★ 2.2k • written 9.4 years ago by ▴ 150
0
votes
0
replies
2.7k
views
Answer: A: GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in
9.4 years ago by manekineko ▴ 150
0
votes
1
reply
6.7k
views
Comment: C: Extending ends of sequences with the help of reads?
9.4 years ago by manekineko ▴ 150
0
votes
0
replies
6.7k
views
Comment: Comment: Extending ends of sequences with the help of reads?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
6.7k
views
Comment: Comment: Extending ends of sequences with the help of reads?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
2.4k
views
Comment: Comment: Tool to retrieve regions with reads?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
0
replies
3.9k
views
Comment: C: Count number of mapped raw reads for each transcript in SAM file
9.4 years ago by manekineko ▴ 150
7
votes
10
replies
3.9k
views
Count number of mapped raw reads for each transcript in SAM file
RNA-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 150
0
votes
1
reply
3.9k
views
Comment: C: Count number of mapped raw reads for each transcript in SAM file
9.4 years ago by manekineko ▴ 150
0
votes
0
replies
2.4k
views
Comment: C: Tool to retrieve regions with reads?
9.5 years ago by manekineko ▴ 150
4
votes
12
replies
2.4k
views
Tool to retrieve regions with reads?
RNA-Seq
updated 23 months ago by 44k • written 9.5 years ago by ▴ 150
0
votes
0
replies
2.4k
views
Comment: Comment: Tool to retrieve regions with reads?
updated 23 months ago by 44k • written 9.5 years ago by ▴ 150
0
votes
0
replies
2.4k
views
Comment: A: Tool to retrieve regions with reads?
9.5 years ago by manekineko ▴ 150
2
votes
1
reply
1.9k
views
smallRNA-seq, but have files R1/R1fastq?
fastq smallRNAs single-end
updated 22 months ago by 44k • written 9.5 years ago by ▴ 150
99 results • Page 2 of 2
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