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Comment: C: How to assign Active Enhancer to every genes within 10 kb region?
7.7 years ago by Bioinformatist Newbie ▴ 270
5
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6
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2.4k
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How to assign Active Enhancer to every genes within 10 kb region?
Enhancer Bedops Closest
updated 7.7 years ago by 36k • written 7.7 years ago by ▴ 270
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5.9k
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Comment: C: Annotaion Based On The Genomic Range
7.7 years ago by Bioinformatist Newbie ▴ 270
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0
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8.8k
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Comment: C: ChromHMM 15 State Descriptions (Genic Enhancer)
7.8 years ago by Bioinformatist Newbie ▴ 270
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1
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3.2k
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Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)
Chromatin Accessibility Transcriptomics
updated 7.9 years ago by ▴ 600 • written 8.7 years ago by ▴ 270
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1.7k
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Processing RNA-seq data by following Roadmap Epigenomics Pipeline
Roadmap RNA-seq
8.1 years ago by Bioinformatist Newbie ▴ 270
6
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1
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3.1k
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Identify Target genes of an enhancer
Enhancer Peaks
updated 8.2 years ago by 28k • written 8.4 years ago by ▴ 270
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1
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2.1k
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Identify target miRNA for a mRNA
miRNA
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 270
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0
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1.8k
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Comment: C: Prediction of TF binding sites at genome wide scale
8.3 years ago by Bioinformatist Newbie ▴ 270
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0
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7.7k
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Comment: C: How to query for a specific motif upstream of each of the gene in a list?
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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1.8k
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Answer: A: Prediction of TF binding sites at genome wide scale
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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3
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1.8k
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Prediction of TF binding sites at genome wide scale
ChIP-Seq TFBS Prediction
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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20k
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Comment: C: findOverlaps function in R
8.4 years ago by Bioinformatist Newbie ▴ 270
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1
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6.0k
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Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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6.0k
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Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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1
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10k
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Comment: C: Annotate Regions In Bed File With Nearest Downstream Gene
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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6.0k
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Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
6.0k
views
Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
6.0k
views
Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
0
votes
1
reply
6.0k
views
Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
0
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0
replies
6.0k
views
Comment: C: Annotate peaks based on Histone Mark
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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5.2k
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Comment: C: Mapping Paired End Solid Data Using Bwa
8.4 years ago by Bioinformatist Newbie ▴ 270
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0
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8.5k
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Comment: C: Aligning Colorspace Reads Using Bwa
8.4 years ago by Bioinformatist Newbie ▴ 270
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1
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27k
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Comment: C: Calculate Per Exon/Per Gene Coverage
8.4 years ago by Bioinformatist Newbie ▴ 270
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1
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27k
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Comment: C: Calculate Per Exon/Per Gene Coverage
8.4 years ago by Bioinformatist Newbie ▴ 270
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1
reply
17k
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Comment: C: Convert HTSeq count table to RPKM value using GFF/GTF
8.5 years ago by Bioinformatist Newbie ▴ 270
1
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1
reply
38k
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Comment: C: GTF annotation file for Human
8.6 years ago by Bioinformatist Newbie ▴ 270
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0
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13k
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Comment: C: Mapping Between Affymetrix Features To Genes
8.6 years ago by Bioinformatist Newbie ▴ 270
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0
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2.5k
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Comment: C: Chip-Seq (Transcription Factor) data resources
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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1
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2.5k
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Comment: C: Chip-Seq (Transcription Factor) data resources
8.6 years ago by Bioinformatist Newbie ▴ 270
6
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9
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2.5k
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Chip-Seq (Transcription Factor) data resources
ChIP-Seq Transcription factor Datasets
updated 8.6 years ago by 104k • written 8.6 years ago by ▴ 270
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0
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3.6k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.6k
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Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.6k
views
Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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0
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4.1k
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Comment: C: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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1
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3.6k
views
Comment: C: Threshold for calling DNAse-seq peaks ON or OFF
8.6 years ago by Bioinformatist Newbie ▴ 270
1
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9
replies
3.6k
views
Threshold for calling DNAse-seq peaks ON or OFF
DNase-seq peaks cutoff Roadmap
updated 8.6 years ago by 36k • written 8.6 years ago by ▴ 270
0
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0
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2.5k
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Comment: C: How to identify Accessible genes from DNase-seq?
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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0
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7.5k
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Comment: C: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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0
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7.5k
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Comment: C: Which Pipeline To Analyze Dnase-Seq For Significant Regulatory-Region Finding?
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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1
reply
4.1k
views
Comment: C: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.6 years ago by Bioinformatist Newbie ▴ 270
0
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0
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8.6k
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Comment: C: Large-scale open-source bioinformatics datasets
8.7 years ago by Bioinformatist Newbie ▴ 270
1
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0
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73k
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Comment: C: Analysing Microarray Data In Bioconductor
8.7 years ago by Bioinformatist Newbie ▴ 270
0
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1
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20k
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Comment: Comment: how to use log transformation with read count data?
updated 3.6 years ago by 44k • written 8.8 years ago by ▴ 270
0
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0
replies
1.6k
views
How to find out Drug Mode of Action?
mRNA splicing MoA exon-skipping
8.9 years ago by Bioinformatist Newbie ▴ 270
0
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0
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3.9k
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Comment: C: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
9.0 years ago by Bioinformatist Newbie ▴ 270
0
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3
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3.9k
views
Peak calling with MACS for DNase-seq data and Peak annotation by Homer
DNase-seq MACS Homer Peak-Calling
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 270
0
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1
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2.5k
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Comment: C: How to identify Accessible genes from DNase-seq?
9.0 years ago by Bioinformatist Newbie ▴ 270
3
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5
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2.5k
views
How to identify Accessible genes from DNase-seq?
DNase-seq Homer DNA-Accessibility
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 270
0
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2
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2.3k
views
Comment: C: How to booleanize gene expression data from 1 cell type.
9.0 years ago by Bioinformatist Newbie ▴ 270
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