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2.4k
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assigning cases and controls in plink
plink
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 260
0
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0
replies
891
views
How to find GTex samples as accession list for download
genome
4.7 years ago by nchuang ▴ 260
1
vote
0
replies
2.8k
views
bedtools genomecov with vcfs
sequencing genome
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 260
0
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1
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4.8k
views
Answer: A: Usage of GATK Joint genotyping and filtering, or filtering and then joint genoty
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 260
0
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0
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4.4k
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Comment: Comment: GATK jointgenotyping file locking and too many open files woes
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 260
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0
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1.6k
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Comment: C: "ERROR:...Base position exceeds Integer.MAX_VALUE" using Refined IBD with map fi
5.1 years ago by nchuang ▴ 260
2
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0
replies
1.3k
views
how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
beagle imputation plink
5.1 years ago by nchuang ▴ 260
0
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0
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1.5k
views
How to decide method for imputing the missing genotype in a VCF
imputation impute2 shapeit beagle
5.1 years ago by nchuang ▴ 260
0
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0
replies
1.1k
views
Possible to call variants from PacBio reads from a mixed sample?
pacbio long reads SNP
6.1 years ago by nchuang ▴ 260
0
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1
reply
1.7k
views
Comment: C: CpG Methylation data from PacBio sequencing
6.2 years ago by nchuang ▴ 260
5
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10
replies
1.7k
views
CpG Methylation data from PacBio sequencing
sequencing next-gen pacbio epigenetics
updated 6.2 years ago by ★ 5.2k • written 6.2 years ago by ▴ 260
0
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1
reply
1.7k
views
Comment: C: CpG Methylation data from PacBio sequencing
6.2 years ago by nchuang ▴ 260
7
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5
replies
12k
views
Best way to convert VCF to PLINK file format and merge chromosomes?
plink
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 260
0
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0
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4.9k
views
Comment: C: VIew reads sorted by name in IGV
7.2 years ago by nchuang ▴ 260
1
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6
replies
4.9k
views
VIew reads sorted by name in IGV
bam igv samtools
updated 7.2 years ago by ★ 2.9k • written 7.2 years ago by ▴ 260
0
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0
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4.9k
views
Comment: C: VIew reads sorted by name in IGV
7.2 years ago by nchuang ▴ 260
0
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0
replies
4.9k
views
Comment: C: VIew reads sorted by name in IGV
7.2 years ago by nchuang ▴ 260
0
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0
replies
1.2k
views
Is it possible to map prior to Pregap4 and Gap4?
staden gap4 pregap4
7.2 years ago by nchuang ▴ 260
0
votes
0
replies
1.4k
views
Assemblying Sanger traces and error threshold
sanger abi assembly
7.4 years ago by nchuang ▴ 260
2
votes
3
replies
2.5k
views
Reliable alignment tool for similar sequences of similar length other than Mummer?
alignment Mummer
updated 7.5 years ago by ★ 1.1k • written 8.6 years ago by ▴ 260
0
votes
1
reply
1.4k
views
Jalview and Windows 10 scaling not working
jalview
7.8 years ago by nchuang ▴ 260
0
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0
replies
2.4k
views
Comment: C: Edit a single base in SeqRecord object in Biopython?
8.0 years ago by nchuang ▴ 260
0
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2
replies
2.4k
views
Edit a single base in SeqRecord object in Biopython?
biopython
updated 8.0 years ago by 5.9k • written 8.0 years ago by ▴ 260
3
votes
8
replies
2.7k
views
Popen Blat has different behavior than same syntax in shell
python blat
8.2 years ago by nchuang ▴ 260
1
vote
1
reply
2.7k
views
Comment: C: Popen Blat has different behavior than same syntax in shell
8.2 years ago by nchuang ▴ 260
0
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0
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2.7k
views
Comment: C: Popen Blat has different behavior than same syntax in shell
8.2 years ago by nchuang ▴ 260
0
votes
0
replies
2.7k
views
Comment: C: Popen Blat has different behavior than same syntax in shell
8.2 years ago by nchuang ▴ 260
1
vote
1
reply
2.7k
views
Comment: C: Popen Blat has different behavior than same syntax in shell
8.2 years ago by nchuang ▴ 260
1
vote
0
replies
2.5k
views
Answer: A: Can NUCmer align a short sequence with a much longer sequence (local alignment)?
8.2 years ago by nchuang ▴ 260
1
vote
3
replies
2.5k
views
Can NUCmer align a short sequence with a much longer sequence (local alignment)?
nucmer mummer local alignment
8.2 years ago by nchuang ▴ 260
0
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0
replies
2.5k
views
Comment: C: Can NUCmer align a short sequence with a much longer sequence (local alignment)?
8.2 years ago by nchuang ▴ 260
0
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0
replies
2.6k
views
Comment: C: Fast way to extract hg19 sequences with Biopython?
8.4 years ago by nchuang ▴ 260
0
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0
replies
2.6k
views
Comment: C: Fast way to extract hg19 sequences with Biopython?
8.4 years ago by nchuang ▴ 260
2
votes
4
replies
2.6k
views
Fast way to extract hg19 sequences with Biopython?
python biopython
8.4 years ago by nchuang ▴ 260
0
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0
replies
2.0k
views
How to force NUCmer to use exact match instead of unique match?
nucmer mummer alignment
8.4 years ago by nchuang ▴ 260
0
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0
replies
2.8k
views
Comment: C: Using a Multiple Seq Alignment tool for pairwise alignments possible?
8.6 years ago by nchuang ▴ 260
0
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0
replies
1.8k
views
Comment: C: How to visualize a set of sequence alignments that all have the same reference s
8.6 years ago by nchuang ▴ 260
0
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0
replies
2.7k
views
Comment: C: Substitution matrices to score variation between protein sequences?
8.6 years ago by nchuang ▴ 260
6
votes
3
replies
2.7k
views
Substitution matrices to score variation between protein sequences?
alignment blosum62
updated 8.6 years ago by ★ 1.8k • written 8.6 years ago by ▴ 260
0
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1
reply
1.8k
views
Comment: C: How to visualize a set of sequence alignments that all have the same reference s
8.6 years ago by nchuang ▴ 260
2
votes
4
replies
1.8k
views
How to visualize a set of sequence alignments that all have the same reference sequence?
alignment
updated 8.6 years ago by ▴ 560 • written 8.6 years ago by ▴ 260
0
votes
0
replies
2.8k
views
Comment: C: Using a Multiple Seq Alignment tool for pairwise alignments possible?
8.6 years ago by nchuang ▴ 260
1
vote
4
replies
2.8k
views
Using a Multiple Seq Alignment tool for pairwise alignments possible?
multiple-sequence-alignment msa alignment
updated 18 months ago by 44k • written 8.6 years ago by ▴ 260
0
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0
replies
4.0k
views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
8.7 years ago by nchuang ▴ 260
0
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0
replies
4.0k
views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
8.7 years ago by nchuang ▴ 260
0
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3
replies
4.0k
views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
8.7 years ago by nchuang ▴ 260
5
votes
6
replies
4.0k
views
How to create empty Biopython MultipleSeqAlignment object?
biopython
updated 8.7 years ago by ▴ 200 • written 8.7 years ago by ▴ 260
0
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0
replies
2.2k
views
Comment: C: LRE3 Retrotransposon sequence
8.7 years ago by nchuang ▴ 260
0
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1
reply
2.2k
views
Comment: C: LRE3 Retrotransposon sequence
8.7 years ago by nchuang ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: LRE3 Retrotransposon sequence
8.7 years ago by nchuang ▴ 260
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